Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15060
Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Vancomycin 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,257,474 | + | -0.2 | |||
3,257,474 | + | -0.7 | |||
3,257,474 | + | +0.2 | |||
3,257,597 | + | RR42_RS15055 | 0.12 | +0.2 | |
3,257,597 | + | RR42_RS15055 | 0.12 | -0.7 | |
3,257,598 | - | RR42_RS15055 | 0.12 | -0.8 | |
3,257,658 | + | RR42_RS15055 | 0.20 | -0.7 | |
3,257,659 | - | RR42_RS15055 | 0.20 | -1.0 | |
3,257,694 | + | RR42_RS15055 | 0.25 | -0.1 | |
3,257,694 | + | RR42_RS15055 | 0.25 | -1.9 | |
3,257,695 | - | RR42_RS15055 | 0.25 | -0.4 | |
3,257,695 | - | RR42_RS15055 | 0.25 | +0.5 | |
3,257,695 | - | RR42_RS15055 | 0.25 | -0.3 | |
3,258,165 | + | +0.6 | |||
3,258,165 | + | -0.9 | |||
3,258,165 | + | -1.0 | |||
3,258,165 | + | +0.2 | |||
3,258,171 | + | -1.2 | |||
3,258,174 | + | +0.7 | |||
3,258,174 | + | +0.4 | |||
3,258,174 | + | +0.1 | |||
3,258,175 | - | +0.1 | |||
3,258,226 | - | -0.7 | |||
3,258,336 | + | -0.7 | |||
3,258,337 | - | +0.3 | |||
3,258,728 | + | RR42_RS15060 | 0.66 | -0.9 | |
3,258,758 | + | RR42_RS15060 | 0.73 | -1.8 | |
3,258,785 | + | RR42_RS15060 | 0.79 | -1.4 | |
3,258,846 | + | -1.2 |
Or see this region's nucleotide sequence