Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14050 and RR42_RS14055 are separated by 87 nucleotides RR42_RS14055 and RR42_RS14060 are separated by 273 nucleotides RR42_RS14060 and RR42_RS14065 are separated by 14 nucleotides
RR42_RS14050: RR42_RS14050 - signal peptidase, at 3,023,572 to 3,024,471
_RS14050
RR42_RS14055: RR42_RS14055 - elongation factor 4, at 3,024,559 to 3,026,352
_RS14055
RR42_RS14060: RR42_RS14060 - glutaredoxin, at 3,026,626 to 3,026,898
_RS14060
RR42_RS14065: RR42_RS14065 - serine peptidase, at 3,026,913 to 3,028,403
_RS14065
Position (kb)
3024
3025
3026
3027 Strain fitness (log2 ratio)
-2
-1
0
1 at 3023.574 kb on - strand at 3024.479 kb on - strand at 3024.479 kb on - strand at 3024.500 kb on - strand at 3024.783 kb on - strand, within RR42_RS14055 at 3024.783 kb on - strand, within RR42_RS14055 at 3025.746 kb on - strand, within RR42_RS14055 at 3025.746 kb on - strand, within RR42_RS14055 at 3026.166 kb on - strand, within RR42_RS14055 at 3026.423 kb on - strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.594 kb on + strand at 3026.595 kb on - strand at 3026.595 kb on - strand at 3026.595 kb on - strand at 3026.595 kb on - strand at 3026.596 kb on + strand at 3026.596 kb on + strand at 3026.596 kb on + strand at 3026.596 kb on + strand at 3026.691 kb on - strand, within RR42_RS14060 at 3026.691 kb on - strand, within RR42_RS14060 at 3026.691 kb on - strand, within RR42_RS14060 at 3026.691 kb on - strand, within RR42_RS14060 at 3026.691 kb on - strand, within RR42_RS14060 at 3026.867 kb on + strand, within RR42_RS14060 at 3026.867 kb on + strand, within RR42_RS14060 at 3026.867 kb on + strand, within RR42_RS14060 at 3026.868 kb on - strand, within RR42_RS14060 at 3026.868 kb on - strand, within RR42_RS14060 at 3026.945 kb on + strand at 3026.945 kb on + strand at 3026.946 kb on - strand at 3026.946 kb on - strand at 3026.946 kb on - strand at 3027.221 kb on + strand, within RR42_RS14065
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 3,023,574 - -0.8 3,024,479 - -1.9 3,024,479 - -0.0 3,024,500 - -2.3 3,024,783 - RR42_RS14055 0.12 +0.3 3,024,783 - RR42_RS14055 0.12 -0.4 3,025,746 - RR42_RS14055 0.66 -1.0 3,025,746 - RR42_RS14055 0.66 -2.0 3,026,166 - RR42_RS14055 0.90 -1.3 3,026,423 - -0.7 3,026,594 + +0.4 3,026,594 + -0.5 3,026,594 + +0.4 3,026,594 + -0.6 3,026,594 + -0.4 3,026,594 + -2.2 3,026,594 + -0.3 3,026,594 + +0.2 3,026,594 + -0.6 3,026,595 - -0.6 3,026,595 - -1.3 3,026,595 - -0.5 3,026,595 - -0.2 3,026,596 + -2.2 3,026,596 + -0.3 3,026,596 + -0.7 3,026,596 + -1.0 3,026,691 - RR42_RS14060 0.24 -1.5 3,026,691 - RR42_RS14060 0.24 -1.8 3,026,691 - RR42_RS14060 0.24 -0.6 3,026,691 - RR42_RS14060 0.24 -0.4 3,026,691 - RR42_RS14060 0.24 -0.9 3,026,867 + RR42_RS14060 0.88 +0.3 3,026,867 + RR42_RS14060 0.88 +1.1 3,026,867 + RR42_RS14060 0.88 -0.7 3,026,868 - RR42_RS14060 0.89 -0.1 3,026,868 - RR42_RS14060 0.89 -0.5 3,026,945 + +0.7 3,026,945 + -0.3 3,026,946 - -1.4 3,026,946 - +0.6 3,026,946 - -0.7 3,027,221 + RR42_RS14065 0.21 -0.9
Or see this region's nucleotide sequence