Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14055

Experiment: R2A with Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS14050 and RR42_RS14055 are separated by 87 nucleotidesRR42_RS14055 and RR42_RS14060 are separated by 273 nucleotidesRR42_RS14060 and RR42_RS14065 are separated by 14 nucleotides RR42_RS14050: RR42_RS14050 - signal peptidase, at 3,023,572 to 3,024,471 _RS14050 RR42_RS14055: RR42_RS14055 - elongation factor 4, at 3,024,559 to 3,026,352 _RS14055 RR42_RS14060: RR42_RS14060 - glutaredoxin, at 3,026,626 to 3,026,898 _RS14060 RR42_RS14065: RR42_RS14065 - serine peptidase, at 3,026,913 to 3,028,403 _RS14065 Position (kb) 3024 3025 3026 3027Strain fitness (log2 ratio) -2 -1 0 1at 3023.574 kb on - strandat 3024.479 kb on - strandat 3024.479 kb on - strandat 3024.500 kb on - strandat 3024.783 kb on - strand, within RR42_RS14055at 3024.783 kb on - strand, within RR42_RS14055at 3025.746 kb on - strand, within RR42_RS14055at 3025.746 kb on - strand, within RR42_RS14055at 3026.166 kb on - strand, within RR42_RS14055at 3026.423 kb on - strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.594 kb on + strandat 3026.595 kb on - strandat 3026.595 kb on - strandat 3026.595 kb on - strandat 3026.595 kb on - strandat 3026.596 kb on + strandat 3026.596 kb on + strandat 3026.596 kb on + strandat 3026.596 kb on + strandat 3026.691 kb on - strand, within RR42_RS14060at 3026.691 kb on - strand, within RR42_RS14060at 3026.691 kb on - strand, within RR42_RS14060at 3026.691 kb on - strand, within RR42_RS14060at 3026.691 kb on - strand, within RR42_RS14060at 3026.867 kb on + strand, within RR42_RS14060at 3026.867 kb on + strand, within RR42_RS14060at 3026.867 kb on + strand, within RR42_RS14060at 3026.868 kb on - strand, within RR42_RS14060at 3026.868 kb on - strand, within RR42_RS14060at 3026.945 kb on + strandat 3026.945 kb on + strandat 3026.946 kb on - strandat 3026.946 kb on - strandat 3026.946 kb on - strandat 3027.221 kb on + strand, within RR42_RS14065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
remove
3,023,574 - -0.8
3,024,479 - -1.9
3,024,479 - -0.0
3,024,500 - -2.3
3,024,783 - RR42_RS14055 0.12 +0.3
3,024,783 - RR42_RS14055 0.12 -0.4
3,025,746 - RR42_RS14055 0.66 -1.0
3,025,746 - RR42_RS14055 0.66 -2.0
3,026,166 - RR42_RS14055 0.90 -1.3
3,026,423 - -0.7
3,026,594 + +0.4
3,026,594 + -0.5
3,026,594 + +0.4
3,026,594 + -0.6
3,026,594 + -0.4
3,026,594 + -2.2
3,026,594 + -0.3
3,026,594 + +0.2
3,026,594 + -0.6
3,026,595 - -0.6
3,026,595 - -1.3
3,026,595 - -0.5
3,026,595 - -0.2
3,026,596 + -2.2
3,026,596 + -0.3
3,026,596 + -0.7
3,026,596 + -1.0
3,026,691 - RR42_RS14060 0.24 -1.5
3,026,691 - RR42_RS14060 0.24 -1.8
3,026,691 - RR42_RS14060 0.24 -0.6
3,026,691 - RR42_RS14060 0.24 -0.4
3,026,691 - RR42_RS14060 0.24 -0.9
3,026,867 + RR42_RS14060 0.88 +0.3
3,026,867 + RR42_RS14060 0.88 +1.1
3,026,867 + RR42_RS14060 0.88 -0.7
3,026,868 - RR42_RS14060 0.89 -0.1
3,026,868 - RR42_RS14060 0.89 -0.5
3,026,945 + +0.7
3,026,945 + -0.3
3,026,946 - -1.4
3,026,946 - +0.6
3,026,946 - -0.7
3,027,221 + RR42_RS14065 0.21 -0.9

Or see this region's nucleotide sequence