Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12455

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,675,210	-				+1.3
2,675,310	+				+1.1
2,675,310	+				+0.9
2,675,311	-				+1.1
2,675,321	+				+0.2
2,675,321	+				-1.1
2,675,322	-				+1.3
2,675,366	+				+1.2
2,675,492	+		RR42_RS12450	0.39	-0.2
2,675,537	+		RR42_RS12450	0.51	-0.4
2,675,558	+		RR42_RS12450	0.57	-0.1
2,675,576	+		RR42_RS12450	0.62	+0.7
2,675,642	+		RR42_RS12450	0.80	-0.4
2,675,681	+				-0.6
2,675,682	-				-0.4
2,675,682	-				-0.4
2,675,682	-				-1.0
2,675,682	-				-0.3
2,675,687	+				+0.3
2,675,687	+				-0.1
2,675,687	+				-1.5
2,675,688	-				+0.4
2,675,688	-				+2.3
2,675,699	+				+0.7
2,675,836	-				+0.5
2,675,846	-				+0.1
2,675,846	-				+1.3
2,675,951	+				+0.4
2,675,952	-				+1.5
2,675,952	-				+0.0
2,675,952	-				+0.2
2,675,967	-				-0.7
2,676,086	+				-0.5
2,676,198	+		RR42_RS12455	0.11	+1.1
2,676,287	-		RR42_RS12455	0.14	-0.2
2,676,495	-		RR42_RS12455	0.22	-0.0
2,676,548	+		RR42_RS12455	0.24	+0.3
2,676,794	-		RR42_RS12455	0.34	-1.2
2,676,812	+		RR42_RS12455	0.34	-0.0
2,677,154	+		RR42_RS12455	0.47	-0.0
2,677,155	-		RR42_RS12455	0.47	+0.4
2,677,378	-		RR42_RS12455	0.56	+0.2
2,677,379	+		RR42_RS12455	0.56	+0.2
2,677,379	+		RR42_RS12455	0.56	+1.9
2,677,379	+		RR42_RS12455	0.56	+1.4
2,677,380	-		RR42_RS12455	0.56	+0.3
2,677,448	+		RR42_RS12455	0.59	+0.6
2,677,449	-		RR42_RS12455	0.59	-0.0
2,677,449	-		RR42_RS12455	0.59	+0.0
2,677,553	+		RR42_RS12455	0.63	+0.3
2,677,690	-		RR42_RS12455	0.68	+0.9
2,678,028	-		RR42_RS12455	0.81	+0.9
2,678,028	-		RR42_RS12455	0.81	+0.6
2,678,433	-				+0.6
2,678,517	-				+1.0
2,678,626	-				+0.5
2,678,685	+				-0.6
2,678,968	+		RR42_RS12460	0.28	+0.6
2,678,969	-		RR42_RS12460	0.28	+0.3
2,679,039	+		RR42_RS12460	0.35	+1.3
2,679,039	+		RR42_RS12460	0.35	+0.6
2,679,039	+		RR42_RS12460	0.35	+1.5
2,679,040	-		RR42_RS12460	0.35	+0.7
2,679,040	-		RR42_RS12460	0.35	+1.4
2,679,040	-		RR42_RS12460	0.35	-0.5
2,679,040	-		RR42_RS12460	0.35	+0.4
2,679,073	-		RR42_RS12460	0.39	+0.5
2,679,073	-		RR42_RS12460	0.39	+0.1
2,679,073	-		RR42_RS12460	0.39	+1.4
2,679,073	-		RR42_RS12460	0.39	-0.5
2,679,073	-		RR42_RS12460	0.39	+0.5
2,679,139	-		RR42_RS12460	0.46	-2.3
2,679,145	+		RR42_RS12460	0.47	+0.9
2,679,146	-		RR42_RS12460	0.47	-0.3