Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12225

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,627,701	+		RR42_RS12220	0.36	-0.4
2,627,701	+		RR42_RS12220	0.36	+0.7
2,627,701	+		RR42_RS12220	0.36	+0.4
2,627,701	+		RR42_RS12220	0.36	-0.2
2,627,701	+		RR42_RS12220	0.36	+0.4
2,627,701	+		RR42_RS12220	0.36	-1.7
2,627,701	+		RR42_RS12220	0.36	+0.5
2,627,701	+		RR42_RS12220	0.36	-0.4
2,627,702	-		RR42_RS12220	0.36	-0.1
2,627,702	-		RR42_RS12220	0.36	-0.1
2,627,702	-		RR42_RS12220	0.36	-1.6
2,627,702	-		RR42_RS12220	0.36	+0.0
2,627,702	-		RR42_RS12220	0.36	-0.6
2,627,702	-		RR42_RS12220	0.36	-0.7
2,627,702	-		RR42_RS12220	0.36	+0.7
2,627,702	-		RR42_RS12220	0.36	-0.7
2,627,702	-		RR42_RS12220	0.36	+0.3
2,627,702	-		RR42_RS12220	0.36	-0.6
2,627,702	-		RR42_RS12220	0.36	+0.8
2,627,702	-		RR42_RS12220	0.36	-0.1
2,627,702	-		RR42_RS12220	0.36	-0.1
2,627,703	+		RR42_RS12220	0.36	+0.9
2,627,704	-		RR42_RS12220	0.37	+0.9
2,627,704	-		RR42_RS12220	0.37	+1.9
2,627,712	+		RR42_RS12220	0.37	-0.3
2,627,713	-		RR42_RS12220	0.37	+1.7
2,627,745	+		RR42_RS12220	0.40	-0.2
2,627,745	+		RR42_RS12220	0.40	-0.1
2,628,198	+		RR42_RS12220	0.75	-1.6
2,628,199	-		RR42_RS12220	0.75	-1.3
2,628,360	+		RR42_RS12220	0.88	+1.3
2,628,360	+		RR42_RS12220	0.88	+1.8
2,628,360	+		RR42_RS12220	0.88	+0.6
2,628,360	+		RR42_RS12220	0.88	-0.3
2,628,360	+		RR42_RS12220	0.88	+0.2
2,628,523	+				+0.7
2,628,596	+				+0.7
2,628,596	+				-0.0
2,628,597	-				+0.8
2,628,597	-				+1.5
2,628,597	-				+0.4
2,628,597	-				-0.4
2,628,597	-				+2.0
2,628,602	-				-0.5
2,628,653	-				+1.7
2,628,653	-				-1.1
2,628,658	+				+0.7
2,628,658	+				+0.0
2,628,659	-				+0.7
2,628,659	-				+0.5
2,628,868	+		RR42_RS12225	0.28	-1.4
2,628,868	+		RR42_RS12225	0.28	+0.4
2,628,868	+		RR42_RS12225	0.28	+0.2
2,628,868	+		RR42_RS12225	0.28	-0.7
2,628,868	+		RR42_RS12225	0.28	-0.4
2,628,869	-		RR42_RS12225	0.28	-0.9
2,628,889	+		RR42_RS12225	0.31	-0.1
2,628,889	+		RR42_RS12225	0.31	+0.5
2,628,890	-		RR42_RS12225	0.31	-1.3
2,628,890	-		RR42_RS12225	0.31	-1.1
2,628,890	-		RR42_RS12225	0.31	-1.2
2,628,944	+		RR42_RS12225	0.37	-0.7
2,628,945	-		RR42_RS12225	0.38	-0.6
2,628,956	-		RR42_RS12225	0.39	+0.4
2,628,956	-		RR42_RS12225	0.39	+0.2
2,629,162	+		RR42_RS12225	0.64	-0.0
2,629,208	-		RR42_RS12225	0.69	+1.1
2,629,475	+				+1.1
2,629,476	-				+0.5
2,629,476	-				-0.3
2,629,501	+				+1.0
2,629,502	-				+0.5
2,629,502	-				-0.6
2,629,992	-		RR42_RS12230	0.38	-0.5
2,630,033	+		RR42_RS12230	0.41	-0.4
2,630,033	+		RR42_RS12230	0.41	-1.3
2,630,034	-		RR42_RS12230	0.41	+1.0
2,630,330	+		RR42_RS12230	0.66	-1.7
2,630,331	-		RR42_RS12230	0.66	+0.6
2,630,331	-		RR42_RS12230	0.66	-0.2
2,630,331	-		RR42_RS12230	0.66	+0.5
2,630,331	-		RR42_RS12230	0.66	-1.1
2,630,363	-		RR42_RS12230	0.69	-0.3