Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11190

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,388,587	+				-0.7
2,388,587	+				-0.9
2,388,588	-				+0.4
2,388,588	-				-0.2
2,388,689	+				-0.9
2,388,847	+		RR42_RS11185	0.30	-0.3
2,388,884	+		RR42_RS11185	0.36	-1.4
2,388,885	-		RR42_RS11185	0.36	+1.3
2,388,885	-		RR42_RS11185	0.36	-0.0
2,388,914	+		RR42_RS11185	0.40	-0.4
2,388,915	-		RR42_RS11185	0.41	+1.1
2,388,915	-		RR42_RS11185	0.41	+0.5
2,388,933	-		RR42_RS11185	0.43	+1.3
2,388,973	+		RR42_RS11185	0.50	-0.3
2,388,973	+		RR42_RS11185	0.50	+1.5
2,388,974	-		RR42_RS11185	0.50	-0.3
2,389,084	+		RR42_RS11185	0.67	+0.5
2,389,115	+		RR42_RS11185	0.71	+0.2
2,389,115	+		RR42_RS11185	0.71	-0.8
2,389,116	-		RR42_RS11185	0.72	+0.3
2,389,121	+		RR42_RS11185	0.72	+1.5
2,389,122	-		RR42_RS11185	0.73	-0.9
2,389,122	-		RR42_RS11185	0.73	-0.7
2,389,182	-		RR42_RS11185	0.82	+0.2
2,389,336	+				+1.5
2,389,337	-				-0.2
2,389,474	+				-0.6
2,389,474	+				-1.1
2,389,475	-				+0.3
2,389,475	-				+0.5
2,389,475	-				-1.0
2,389,483	+				+0.5
2,389,483	+				-0.6
2,389,484	-				+0.8
2,389,769	-		RR42_RS11190	0.20	+0.4
2,389,783	+		RR42_RS11190	0.21	-0.3
2,389,783	+		RR42_RS11190	0.21	+0.4
2,389,784	-		RR42_RS11190	0.21	-0.8
2,389,784	-		RR42_RS11190	0.21	-0.0
2,389,784	-		RR42_RS11190	0.21	-1.0
2,389,784	-		RR42_RS11190	0.21	-0.6
2,389,785	+		RR42_RS11190	0.21	-0.6
2,389,785	+		RR42_RS11190	0.21	-0.5
2,389,785	+		RR42_RS11190	0.21	-1.0
2,389,785	+		RR42_RS11190	0.21	+0.2
2,389,785	+		RR42_RS11190	0.21	+1.7
2,389,785	+		RR42_RS11190	0.21	-1.5
2,389,785	+		RR42_RS11190	0.21	-0.8
2,389,786	-		RR42_RS11190	0.21	-0.1
2,389,786	-		RR42_RS11190	0.21	-0.8
2,389,786	-		RR42_RS11190	0.21	+0.5
2,389,827	+		RR42_RS11190	0.24	+0.3
2,389,828	-		RR42_RS11190	0.24	-0.3
2,389,828	-		RR42_RS11190	0.24	+0.7
2,389,909	+		RR42_RS11190	0.29	-0.5
2,389,910	-		RR42_RS11190	0.29	+0.2
2,390,051	-		RR42_RS11190	0.37	-0.3
2,390,210	+		RR42_RS11190	0.47	+1.2
2,390,211	-		RR42_RS11190	0.47	+0.1
2,390,211	-		RR42_RS11190	0.47	-0.9
2,390,317	+		RR42_RS11190	0.54	+1.8
2,390,317	+		RR42_RS11190	0.54	-0.2
2,390,318	-		RR42_RS11190	0.54	-0.9
2,390,318	-		RR42_RS11190	0.54	+2.2
2,390,318	-		RR42_RS11190	0.54	-1.7
2,390,318	-		RR42_RS11190	0.54	-1.0
2,390,318	-		RR42_RS11190	0.54	+1.5
2,390,318	-		RR42_RS11190	0.54	+0.1
2,390,318	-		RR42_RS11190	0.54	+1.2
2,390,318	-		RR42_RS11190	0.54	-0.2
2,390,318	-		RR42_RS11190	0.54	-0.2
2,390,320	-		RR42_RS11190	0.54	+0.6
2,390,329	-		RR42_RS11190	0.55	+0.1
2,390,386	+		RR42_RS11190	0.58	-0.1
2,390,641	+		RR42_RS11190	0.74	+0.9
2,391,009	+				-0.5
2,391,236	+		RR42_RS11195	0.11	-0.1
2,391,237	-		RR42_RS11195	0.11	-1.3
2,391,336	-		RR42_RS11195	0.19	+1.1
2,391,372	+		RR42_RS11195	0.22	+1.1
2,391,372	+		RR42_RS11195	0.22	-1.8
2,391,387	+		RR42_RS11195	0.24	-0.1
2,391,387	+		RR42_RS11195	0.24	-3.1
2,391,387	+		RR42_RS11195	0.24	+0.7
2,391,387	+		RR42_RS11195	0.24	+1.1
2,391,387	+		RR42_RS11195	0.24	-0.9
2,391,388	-		RR42_RS11195	0.24	+0.7
2,391,405	+		RR42_RS11195	0.25	+0.4
2,391,405	+		RR42_RS11195	0.25	+1.5
2,391,406	-		RR42_RS11195	0.25	-0.0
2,391,407	+		RR42_RS11195	0.25	-1.6
2,391,470	+		RR42_RS11195	0.31	+0.5
2,391,470	+		RR42_RS11195	0.31	+0.4
2,391,471	-		RR42_RS11195	0.31	+0.2
2,391,588	+		RR42_RS11195	0.40	-0.7
2,391,589	-		RR42_RS11195	0.40	-0.3
2,391,827	+		RR42_RS11195	0.60	-0.8
2,391,827	+		RR42_RS11195	0.60	-0.2
2,391,827	+		RR42_RS11195	0.60	+0.3
2,391,827	+		RR42_RS11195	0.60	+0.4
2,391,828	-		RR42_RS11195	0.60	+1.7
2,391,828	-		RR42_RS11195	0.60	+0.5
2,391,833	+		RR42_RS11195	0.60	+0.2
2,391,833	+		RR42_RS11195	0.60	-0.2
2,391,833	+		RR42_RS11195	0.60	+1.6
2,391,833	+		RR42_RS11195	0.60	+0.2
2,391,834	-		RR42_RS11195	0.61	+0.6
2,391,834	-		RR42_RS11195	0.61	+1.2
2,391,834	-		RR42_RS11195	0.61	-0.5
2,391,834	-		RR42_RS11195	0.61	-0.5
2,391,834	-		RR42_RS11195	0.61	-0.2