Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10140

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,172,631	+		RR42_RS10135	0.27	-0.1
2,172,631	+		RR42_RS10135	0.27	-0.2
2,172,632	-		RR42_RS10135	0.27	-2.2
2,172,632	-		RR42_RS10135	0.27	-0.4
2,172,736	+		RR42_RS10135	0.35	-0.3
2,172,736	+		RR42_RS10135	0.35	+1.5
2,172,736	+		RR42_RS10135	0.35	-1.1
2,172,737	-		RR42_RS10135	0.35	-0.7
2,172,737	-		RR42_RS10135	0.35	+1.0
2,172,737	-		RR42_RS10135	0.35	+1.4
2,172,737	-		RR42_RS10135	0.35	+0.8
2,172,737	-		RR42_RS10135	0.35	+0.3
2,172,737	-		RR42_RS10135	0.35	+0.5
2,172,737	-		RR42_RS10135	0.35	-0.8
2,172,737	-		RR42_RS10135	0.35	+0.2
2,172,975	+		RR42_RS10135	0.54	-0.4
2,173,264	-		RR42_RS10135	0.76	+1.0
2,173,264	-		RR42_RS10135	0.76	+1.4
2,173,674	-				+0.7
2,173,674	-				-0.7
2,173,674	-				+1.0
2,173,818	-		RR42_RS10140	0.16	+0.5
2,173,834	+		RR42_RS10140	0.18	+0.3
2,173,834	+		RR42_RS10140	0.18	-0.9
2,173,840	+		RR42_RS10140	0.18	+1.7
2,173,840	+		RR42_RS10140	0.18	+0.4
2,173,886	+		RR42_RS10140	0.22	-1.7
2,174,022	+		RR42_RS10140	0.33	-0.1
2,174,023	-		RR42_RS10140	0.33	-0.1
2,174,026	+		RR42_RS10140	0.33	+0.4
2,174,026	+		RR42_RS10140	0.33	+2.2
2,174,026	+		RR42_RS10140	0.33	-0.9
2,174,028	+		RR42_RS10140	0.33	-0.6
2,174,029	-		RR42_RS10140	0.33	+0.3
2,174,124	+		RR42_RS10140	0.41	-1.0
2,174,288	+		RR42_RS10140	0.55	+0.2
2,174,289	-		RR42_RS10140	0.55	+0.5
2,174,378	+		RR42_RS10140	0.62	+0.5
2,174,379	-		RR42_RS10140	0.62	-1.0
2,174,493	+		RR42_RS10140	0.71	+0.2
2,174,530	+		RR42_RS10140	0.74	-0.4
2,174,531	-		RR42_RS10140	0.75	+0.6
2,174,625	+		RR42_RS10140	0.82	+0.9
2,174,685	+		RR42_RS10140	0.87	-0.4
2,174,876	+				+0.8
2,174,876	+				-0.8
2,174,876	+				-1.9
2,174,876	+				-0.1
2,174,876	+				-0.5
2,174,877	-				+0.2
2,174,877	-				-0.1
2,174,877	-				+0.9
2,175,035	+				-0.4
2,175,035	+				-1.0
2,175,036	-				+1.0
2,175,036	-				+1.0
2,175,036	-				+1.4
2,175,163	+		RR42_RS10145	0.64	-0.8
2,175,163	+		RR42_RS10145	0.64	+0.8
2,175,164	-		RR42_RS10145	0.65	+0.6
2,175,164	-		RR42_RS10145	0.65	+1.4
2,175,211	+		RR42_RS10145	0.86	+0.2
2,175,211	+		RR42_RS10145	0.86	+0.2
2,175,212	-		RR42_RS10145	0.86	-0.2
2,175,212	-		RR42_RS10145	0.86	+0.6
2,175,212	-		RR42_RS10145	0.86	-0.1
2,175,212	-		RR42_RS10145	0.86	+0.5
2,175,212	-		RR42_RS10145	0.86	-0.4
2,175,247	-				+0.5
2,175,247	-				+0.3
2,175,247	-				+0.1
2,175,296	+				-0.2
2,175,297	-				+0.1
2,175,297	-				-0.4
2,175,297	-				-0.2
2,175,300	+				+0.3
2,175,301	-				+0.4
2,175,301	-				+1.2
2,175,326	+				-0.0
2,175,326	+				+0.1
2,175,326	+				+0.8
2,175,327	-				-2.7
2,175,327	-				+1.8
2,175,327	-				+1.0
2,175,345	+				+0.3
2,175,345	+				+0.5
2,175,346	-				-1.1
2,175,358	-				+0.3
2,175,445	-		RR42_RS10150	0.32	+0.3
2,175,445	-		RR42_RS10150	0.32	-0.8