Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08920

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,876,309	+		RR42_RS08915	0.83	+1.2
1,876,413	-		RR42_RS08915	0.85	+0.3
1,876,532	+		RR42_RS08915	0.88	+0.3
1,876,533	-		RR42_RS08915	0.89	+2.2
1,876,533	-		RR42_RS08915	0.89	-2.1
1,876,625	-				-0.5
1,876,715	+				-1.0
1,876,716	-				+0.4
1,876,716	-				+0.9
1,876,783	+				-1.5
1,876,819	+				+0.6
1,876,842	-				-0.7
1,876,842	-				-0.2
1,876,847	+				-0.6
1,876,859	+				+0.8
1,876,860	-				+0.3
1,876,860	-				-0.5
1,877,046	+				+0.9
1,877,047	-				+0.8
1,877,047	-				+0.5
1,877,099	-				-0.2
1,877,099	-				+0.1
1,877,288	-		RR42_RS08920	0.20	+0.4
1,877,298	+		RR42_RS08920	0.20	+0.6
1,877,340	+		RR42_RS08920	0.23	+0.5
1,877,488	+		RR42_RS08920	0.33	+0.2
1,877,489	-		RR42_RS08920	0.33	-0.4
1,877,518	+		RR42_RS08920	0.35	+0.3
1,877,519	-		RR42_RS08920	0.35	-0.1
1,877,588	-		RR42_RS08920	0.39	+0.3
1,877,588	-		RR42_RS08920	0.39	+0.6
1,877,668	+		RR42_RS08920	0.45	+0.3
1,877,680	+		RR42_RS08920	0.45	-2.8
1,877,680	+		RR42_RS08920	0.45	-1.2
1,877,680	+		RR42_RS08920	0.45	+1.2
1,877,680	+		RR42_RS08920	0.45	-0.4
1,877,681	-		RR42_RS08920	0.46	-0.4
1,877,681	-		RR42_RS08920	0.46	-1.2
1,877,683	+		RR42_RS08920	0.46	+1.1
1,877,684	-		RR42_RS08920	0.46	-0.4
1,877,684	-		RR42_RS08920	0.46	-1.3
1,877,684	-		RR42_RS08920	0.46	-0.0
1,878,023	-		RR42_RS08920	0.68	+0.5
1,878,046	+		RR42_RS08920	0.69	+0.1
1,878,148	+		RR42_RS08920	0.76	+0.3
1,878,148	+		RR42_RS08920	0.76	+1.1
1,878,149	-		RR42_RS08920	0.76	+0.9
1,878,227	-		RR42_RS08920	0.81	+0.0
1,878,313	+		RR42_RS08920	0.87	+0.3
1,878,314	-		RR42_RS08920	0.87	+1.2
1,878,337	+		RR42_RS08920	0.89	+2.7
1,878,377	-				-1.0
1,878,377	-				-1.0
1,878,508	+				+0.3
1,878,508	+				+0.2
1,878,509	-				+0.4
1,878,702	+		RR42_RS08925	0.26	+0.5
1,878,720	+		RR42_RS08925	0.29	+0.4
1,878,721	-		RR42_RS08925	0.29	-0.1
1,878,828	+		RR42_RS08925	0.45	-0.4
1,878,829	-		RR42_RS08925	0.45	-1.0
1,878,873	+		RR42_RS08925	0.52	-0.2
1,878,873	+		RR42_RS08925	0.52	+0.2
1,879,154	+				-0.1
1,879,155	-				+0.5
1,879,236	-				-1.5
1,879,236	-				+0.3
1,879,241	+				-0.2
1,879,241	+				-0.1
1,879,241	+				-1.4
1,879,242	-				+0.6
1,879,257	+				+0.9
1,879,257	+				-1.9
1,879,298	+		RR42_RS08930	0.13	+1.8
1,879,345	-		RR42_RS08930	0.20	-0.8