Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06290

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,379,822	+		RR42_RS06285	0.86	-0.4
1,379,822	+		RR42_RS06285	0.86	-2.4
1,379,822	+		RR42_RS06285	0.86	-1.5
1,379,822	+		RR42_RS06285	0.86	+0.7
1,379,822	+		RR42_RS06285	0.86	-0.4
1,379,823	-		RR42_RS06285	0.86	-1.7
1,379,823	-		RR42_RS06285	0.86	-0.7
1,379,823	-		RR42_RS06285	0.86	-0.1
1,379,823	-		RR42_RS06285	0.86	+0.2
1,379,826	+		RR42_RS06285	0.87	-0.0
1,379,827	-		RR42_RS06285	0.87	+0.5
1,379,981	+				-0.5
1,379,982	-				-0.3
1,380,107	+				-1.3
1,380,108	-				+1.2
1,380,108	-				-1.2
1,380,125	+				-0.4
1,380,126	-				-2.0
1,380,126	-				-0.3
1,380,241	+				-0.5
1,380,293	+				-0.8
1,380,592	+				-1.0
1,380,593	-				-1.5
1,380,618	+				-0.3
1,380,618	+				+0.8
1,380,618	+				+0.3
1,380,619	-				-0.1
1,380,619	-				+0.2
1,380,619	-				-1.0
1,380,620	+				+0.9
1,380,620	+				-0.9
1,380,621	-				+0.1
1,380,645	-				-0.4
1,380,645	-				-0.8
1,380,793	+		RR42_RS06290	0.23	-0.0
1,380,794	-		RR42_RS06290	0.23	+0.4
1,380,939	+		RR42_RS06290	0.57	+0.4
1,380,939	+		RR42_RS06290	0.57	+0.6
1,380,939	+		RR42_RS06290	0.57	-0.1
1,380,939	+		RR42_RS06290	0.57	-0.1
1,380,939	+		RR42_RS06290	0.57	-0.1
1,380,939	+		RR42_RS06290	0.57	+4.8
1,380,940	-		RR42_RS06290	0.57	-0.0
1,380,940	-		RR42_RS06290	0.57	-0.2
1,380,940	-		RR42_RS06290	0.57	-1.2
1,380,940	-		RR42_RS06290	0.57	-2.0
1,380,940	-		RR42_RS06290	0.57	-0.3
1,380,940	-		RR42_RS06290	0.57	-0.1
1,380,940	-		RR42_RS06290	0.57	-0.3
1,381,084	+				-0.3
1,381,084	+				+0.9
1,381,085	-				-1.0
1,381,099	+				+0.2
1,381,099	+				-0.7
1,381,137	+				-0.8
1,381,137	+				+1.1
1,381,137	+				-0.9
1,381,138	-				+0.1
1,381,138	-				+0.3
1,381,138	-				-0.4
1,381,179	+				-0.5
1,381,180	-				+0.5
1,381,390	+		RR42_RS06295	0.13	-1.7
1,381,390	+		RR42_RS06295	0.13	-1.1
1,381,391	-		RR42_RS06295	0.13	-0.7
1,381,391	-		RR42_RS06295	0.13	+0.2
1,381,450	+		RR42_RS06295	0.16	-0.5
1,381,684	+		RR42_RS06295	0.28	-0.4
1,381,867	+		RR42_RS06295	0.37	-0.4
1,381,867	+		RR42_RS06295	0.37	+0.4
1,381,868	-		RR42_RS06295	0.37	-0.1
1,381,868	-		RR42_RS06295	0.37	+0.4
1,381,868	-		RR42_RS06295	0.37	+1.2
1,381,921	+		RR42_RS06295	0.40	+0.9
1,381,922	-		RR42_RS06295	0.40	-0.3
1,381,922	-		RR42_RS06295	0.40	-0.8
1,381,922	-		RR42_RS06295	0.40	+0.6