Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06285

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,376,559	+				-1.6
1,376,946	+		RR42_RS06280	0.44	+0.5
1,376,947	-		RR42_RS06280	0.44	-0.2
1,377,022	-		RR42_RS06280	0.51	-1.3
1,377,034	+		RR42_RS06280	0.52	-1.0
1,377,034	+		RR42_RS06280	0.52	-0.6
1,377,035	-		RR42_RS06280	0.52	-1.1
1,377,035	-		RR42_RS06280	0.52	-0.8
1,377,193	-		RR42_RS06280	0.67	-2.7
1,377,193	-		RR42_RS06280	0.67	-0.7
1,377,221	+		RR42_RS06280	0.70	-0.9
1,377,551	-				-0.3
1,377,643	+				+0.3
1,377,643	+				-2.5
1,377,643	+				-0.9
1,377,643	+				-0.6
1,377,643	+				-1.5
1,377,644	-				-0.9
1,377,644	-				-0.5
1,377,644	-				+0.2
1,377,644	-				-1.9
1,377,887	+		RR42_RS06285	0.13	-0.6
1,377,887	+				+0.3
1,377,888	-		RR42_RS06285	0.13	-0.3
1,378,013	+		RR42_RS06285	0.18	-1.6
1,378,013	+		RR42_RS06285	0.18	-0.4
1,378,014	-		RR42_RS06285	0.18	+0.9
1,378,032	+		RR42_RS06285	0.19	-0.7
1,378,032	+		RR42_RS06285	0.19	-0.7
1,378,033	-		RR42_RS06285	0.19	+0.2
1,378,279	+		RR42_RS06285	0.28	-0.8
1,378,280	-		RR42_RS06285	0.28	+0.1
1,378,283	+		RR42_RS06285	0.28	-0.1
1,378,283	+		RR42_RS06285	0.28	-0.3
1,378,283	+		RR42_RS06285	0.28	-0.7
1,378,283	+		RR42_RS06285	0.28	-0.2
1,378,283	+		RR42_RS06285	0.28	-0.4
1,378,283	+		RR42_RS06285	0.28	+0.6
1,378,284	-		RR42_RS06285	0.28	+0.4
1,378,284	-		RR42_RS06285	0.28	+2.3
1,378,341	+		RR42_RS06285	0.30	-0.7
1,378,625	+		RR42_RS06285	0.41	-1.1
1,378,626	-		RR42_RS06285	0.41	-1.7
1,378,626	-		RR42_RS06285	0.41	+2.1
1,378,626	-		RR42_RS06285	0.41	-0.2
1,378,626	-		RR42_RS06285	0.41	+0.1
1,378,706	+		RR42_RS06285	0.44	+0.7
1,378,707	-		RR42_RS06285	0.44	+0.8
1,378,707	-		RR42_RS06285	0.44	-0.2
1,378,787	+		RR42_RS06285	0.47	-0.7
1,378,787	+		RR42_RS06285	0.47	+1.1
1,378,787	+		RR42_RS06285	0.47	-0.3
1,378,787	+		RR42_RS06285	0.47	-1.5
1,378,787	+		RR42_RS06285	0.47	-0.9
1,378,788	-		RR42_RS06285	0.47	+0.4
1,378,788	-		RR42_RS06285	0.47	-0.8
1,378,893	+		RR42_RS06285	0.51	-0.3
1,378,922	+		RR42_RS06285	0.52	-0.7
1,378,922	+		RR42_RS06285	0.52	-1.3
1,378,923	-		RR42_RS06285	0.52	-2.3
1,379,486	+		RR42_RS06285	0.74	-0.7
1,379,487	-		RR42_RS06285	0.74	+0.2
1,379,487	-		RR42_RS06285	0.74	-0.8
1,379,666	+		RR42_RS06285	0.81	+0.7
1,379,822	+		RR42_RS06285	0.86	-0.4
1,379,822	+		RR42_RS06285	0.86	-2.4
1,379,822	+		RR42_RS06285	0.86	-1.5
1,379,822	+		RR42_RS06285	0.86	+0.7
1,379,822	+		RR42_RS06285	0.86	-0.4
1,379,823	-		RR42_RS06285	0.86	-1.7
1,379,823	-		RR42_RS06285	0.86	-0.7
1,379,823	-		RR42_RS06285	0.86	-0.1
1,379,823	-		RR42_RS06285	0.86	+0.2
1,379,826	+		RR42_RS06285	0.87	-0.0
1,379,827	-		RR42_RS06285	0.87	+0.5
1,379,981	+				-0.5
1,379,982	-				-0.3
1,380,107	+				-1.3
1,380,108	-				+1.2
1,380,108	-				-1.2
1,380,125	+				-0.4
1,380,126	-				-2.0
1,380,126	-				-0.3
1,380,241	+				-0.5
1,380,293	+				-0.8
1,380,592	+				-1.0
1,380,593	-				-1.5
1,380,618	+				-0.3
1,380,618	+				+0.8
1,380,618	+				+0.3
1,380,619	-				-0.1
1,380,619	-				+0.2
1,380,619	-				-1.0
1,380,620	+				+0.9
1,380,620	+				-0.9
1,380,621	-				+0.1
1,380,645	-				-0.4
1,380,645	-				-0.8
1,380,793	+		RR42_RS06290	0.23	-0.0
1,380,794	-		RR42_RS06290	0.23	+0.4
1,380,939	+		RR42_RS06290	0.57	+0.4
1,380,939	+		RR42_RS06290	0.57	+0.6
1,380,939	+		RR42_RS06290	0.57	-0.1
1,380,939	+		RR42_RS06290	0.57	-0.1
1,380,939	+		RR42_RS06290	0.57	-0.1
1,380,939	+		RR42_RS06290	0.57	+4.8
1,380,940	-		RR42_RS06290	0.57	-0.0
1,380,940	-		RR42_RS06290	0.57	-0.2
1,380,940	-		RR42_RS06290	0.57	-1.2
1,380,940	-		RR42_RS06290	0.57	-2.0
1,380,940	-		RR42_RS06290	0.57	-0.3
1,380,940	-		RR42_RS06290	0.57	-0.1
1,380,940	-		RR42_RS06290	0.57	-0.3
1,381,084	+				-0.3
1,381,084	+				+0.9
1,381,085	-				-1.0
1,381,099	+				+0.2
1,381,099	+				-0.7
1,381,137	+				-0.8
1,381,137	+				+1.1
1,381,137	+				-0.9
1,381,138	-				+0.1
1,381,138	-				+0.3
1,381,138	-				-0.4
1,381,179	+				-0.5
1,381,180	-				+0.5