Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04730

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04725 and RR42_RS04730 are separated by 222 nucleotidesRR42_RS04730 and RR42_RS04735 are separated by 105 nucleotides RR42_RS04725: RR42_RS04725 - coproporphyrinogen III oxidase, at 1,051,492 to 1,052,403 _RS04725 RR42_RS04730: RR42_RS04730 - phosphoribosylamine--glycine ligase, at 1,052,626 to 1,053,894 _RS04730 RR42_RS04735: RR42_RS04735 - hypothetical protein, at 1,054,000 to 1,054,725 _RS04735 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1 2at 1052.407 kb on - strandat 1052.407 kb on - strandat 1052.490 kb on + strandat 1052.490 kb on + strandat 1052.490 kb on + strandat 1052.490 kb on + strandat 1052.491 kb on - strandat 1052.491 kb on - strandat 1052.524 kb on - strandat 1052.628 kb on - strandat 1053.900 kb on - strandat 1054.482 kb on - strand, within RR42_RS04735at 1054.699 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.863 kb on - strandat 1054.863 kb on - strandat 1054.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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1,052,407 - +0.0
1,052,407 - +0.9
1,052,490 + -2.1
1,052,490 + -0.3
1,052,490 + -0.7
1,052,490 + +0.7
1,052,491 - +2.3
1,052,491 - -0.0
1,052,524 - -0.1
1,052,628 - -0.4
1,053,900 - -0.7
1,054,482 - RR42_RS04735 0.66 +0.9
1,054,699 - +0.9
1,054,830 - +0.7
1,054,830 - -0.4
1,054,830 - +0.4
1,054,830 - +0.0
1,054,830 - +0.7
1,054,863 - +0.2
1,054,863 - +0.3
1,054,880 - +1.4

Or see this region's nucleotide sequence