Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04235

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04230 and RR42_RS04235 are separated by 788 nucleotidesRR42_RS04235 and RR42_RS04240 are separated by 215 nucleotidesRR42_RS04240 and RR42_RS04245 are separated by 446 nucleotides RR42_RS04230: RR42_RS04230 - dihydrodipicolinate synthase, at 935,729 to 936,637 _RS04230 RR42_RS04235: RR42_RS04235 - glutamate-1-semialdehyde aminotransferase, at 937,426 to 938,715 _RS04235 RR42_RS04240: RR42_RS04240 - rubredoxin, at 938,931 to 939,101 _RS04240 RR42_RS04245: RR42_RS04245 - chemotaxis protein CheY, at 939,548 to 940,042 _RS04245 Position (kb) 937 938 939Strain fitness (log2 ratio) -1 0 1 2at 936.645 kb on - strandat 936.645 kb on - strandat 936.691 kb on + strandat 936.691 kb on + strandat 936.707 kb on + strandat 936.707 kb on + strandat 936.708 kb on - strandat 936.708 kb on - strandat 936.708 kb on - strandat 936.725 kb on + strandat 936.725 kb on + strandat 936.725 kb on + strandat 936.726 kb on - strandat 936.776 kb on - strandat 936.776 kb on - strandat 936.776 kb on - strandat 936.776 kb on - strandat 937.042 kb on + strandat 937.371 kb on - strandat 938.769 kb on - strandat 939.438 kb on - strandat 939.564 kb on + strandat 939.565 kb on - strandat 939.565 kb on - strandat 939.565 kb on - strandat 939.565 kb on - strandat 939.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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936,645 - +0.5
936,645 - +0.5
936,691 + -0.3
936,691 + -0.3
936,707 + -0.3
936,707 + +0.5
936,708 - -0.4
936,708 - -0.5
936,708 - +2.2
936,725 + +1.0
936,725 + +0.2
936,725 + +1.0
936,726 - -0.5
936,776 - +1.2
936,776 - -0.3
936,776 - -0.3
936,776 - -0.1
937,042 + +0.2
937,371 - -0.1
938,769 - +0.7
939,438 - -0.3
939,564 + -0.6
939,565 - -0.6
939,565 - +2.1
939,565 - +0.4
939,565 - +0.2
939,575 - -0.1

Or see this region's nucleotide sequence