Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03905 and RR42_RS03910 are separated by 169 nucleotides RR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides
RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863
_RS03905
RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506
_RS03910
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
Position (kb) 862
863 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 861.064 kb on + strand, within RR42_RS03905 at 861.281 kb on + strand, within RR42_RS03905 at 861.281 kb on + strand, within RR42_RS03905 at 861.282 kb on - strand, within RR42_RS03905 at 861.282 kb on - strand, within RR42_RS03905 at 861.282 kb on - strand, within RR42_RS03905 at 861.539 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.556 kb on + strand, within RR42_RS03905 at 861.557 kb on - strand, within RR42_RS03905 at 861.590 kb on - strand, within RR42_RS03905 at 861.784 kb on - strand at 861.785 kb on + strand at 861.785 kb on + strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.786 kb on - strand at 861.889 kb on + strand at 862.441 kb on + strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.442 kb on - strand, within RR42_RS03910 at 862.523 kb on + strand at 862.524 kb on - strand at 862.737 kb on + strand, within RR42_RS03915 at 862.738 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915 at 862.814 kb on - strand, within RR42_RS03915 at 863.052 kb on + strand, within RR42_RS03915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 861,064 + RR42_RS03905 0.13 +0.7 861,281 + RR42_RS03905 0.36 -0.7 861,281 + RR42_RS03905 0.36 +0.3 861,282 - RR42_RS03905 0.37 +3.1 861,282 - RR42_RS03905 0.37 +2.7 861,282 - RR42_RS03905 0.37 -0.3 861,539 + RR42_RS03905 0.65 -0.5 861,556 + RR42_RS03905 0.66 -1.0 861,556 + RR42_RS03905 0.66 +0.9 861,556 + RR42_RS03905 0.66 -0.3 861,556 + RR42_RS03905 0.66 -1.1 861,556 + RR42_RS03905 0.66 -0.4 861,557 - RR42_RS03905 0.67 -2.3 861,590 - RR42_RS03905 0.70 -0.7 861,784 - +2.0 861,785 + +0.9 861,785 + +1.5 861,786 - -1.9 861,786 - -0.4 861,786 - +1.6 861,786 - +0.9 861,786 - -0.6 861,786 - +1.2 861,786 - -0.7 861,786 - -1.0 861,889 + -1.3 862,441 + RR42_RS03910 0.86 +1.5 862,442 - RR42_RS03910 0.86 +2.1 862,442 - RR42_RS03910 0.86 +0.1 862,523 + -0.5 862,524 - +0.4 862,737 + RR42_RS03915 0.10 -0.1 862,738 - RR42_RS03915 0.10 +0.4 862,814 - RR42_RS03915 0.14 +0.9 862,814 - RR42_RS03915 0.14 +0.6 863,052 + RR42_RS03915 0.24 -0.0
Or see this region's nucleotide sequence