Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03550 and RR42_RS03555 are separated by 5 nucleotides RR42_RS03555 and RR42_RS03560 are separated by 501 nucleotides
RR42_RS03550: RR42_RS03550 - hypothetical protein, at 788,684 to 791,272
_RS03550
RR42_RS03555: RR42_RS03555 - hypothetical protein, at 791,278 to 792,225
_RS03555
RR42_RS03560: RR42_RS03560 - hypothetical protein, at 792,727 to 793,317
_RS03560
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 790.492 kb on - strand, within RR42_RS03550 at 790.699 kb on - strand, within RR42_RS03550 at 790.882 kb on + strand, within RR42_RS03550 at 790.883 kb on - strand, within RR42_RS03550 at 791.173 kb on - strand at 791.277 kb on + strand at 791.526 kb on + strand, within RR42_RS03555 at 791.673 kb on + strand, within RR42_RS03555 at 791.779 kb on + strand, within RR42_RS03555 at 791.780 kb on - strand, within RR42_RS03555 at 791.788 kb on - strand, within RR42_RS03555 at 791.970 kb on + strand, within RR42_RS03555 at 792.065 kb on - strand, within RR42_RS03555 at 792.276 kb on - strand at 792.276 kb on - strand at 792.276 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.383 kb on - strand at 792.492 kb on - strand at 792.553 kb on + strand at 792.771 kb on + strand at 792.814 kb on + strand, within RR42_RS03560 at 792.814 kb on + strand, within RR42_RS03560 at 792.814 kb on + strand, within RR42_RS03560 at 792.815 kb on - strand, within RR42_RS03560 at 792.818 kb on + strand, within RR42_RS03560
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 790,492 - RR42_RS03550 0.70 -1.3 790,699 - RR42_RS03550 0.78 +0.2 790,882 + RR42_RS03550 0.85 -1.5 790,883 - RR42_RS03550 0.85 -0.1 791,173 - +0.6 791,277 + -0.0 791,526 + RR42_RS03555 0.26 -1.2 791,673 + RR42_RS03555 0.42 -1.9 791,779 + RR42_RS03555 0.53 -3.0 791,780 - RR42_RS03555 0.53 -1.1 791,788 - RR42_RS03555 0.54 +1.3 791,970 + RR42_RS03555 0.73 -2.3 792,065 - RR42_RS03555 0.83 -0.1 792,276 - -2.4 792,276 - -2.2 792,276 - +2.9 792,294 - +0.0 792,294 - +0.8 792,294 - -0.1 792,294 - +0.6 792,383 - -0.2 792,492 - -0.7 792,553 + +0.1 792,771 + -2.6 792,814 + RR42_RS03560 0.15 -2.5 792,814 + RR42_RS03560 0.15 -2.2 792,814 + RR42_RS03560 0.15 -1.0 792,815 - RR42_RS03560 0.15 -0.1 792,818 + RR42_RS03560 0.15 -0.4
Or see this region's nucleotide sequence