Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03475 and RR42_RS03480 are separated by 153 nucleotides RR42_RS03480 and RR42_RS03485 are separated by 202 nucleotides
RR42_RS03475: RR42_RS03475 - exodeoxyribonuclease VII large subunit, at 771,221 to 772,606
_RS03475
RR42_RS03480: RR42_RS03480 - superoxide dismutase, at 772,760 to 773,341
_RS03480
RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581
_RS03485
Position (kb) 771
772
773 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 770.257 kb on + strand at 770.258 kb on - strand at 770.319 kb on + strand at 770.526 kb on - strand at 770.534 kb on + strand at 770.534 kb on + strand at 770.588 kb on - strand at 770.612 kb on - strand at 770.624 kb on + strand at 770.770 kb on + strand at 770.946 kb on - strand at 771.058 kb on + strand at 771.058 kb on + strand at 771.137 kb on - strand at 771.174 kb on + strand at 771.174 kb on + strand at 771.175 kb on - strand at 771.175 kb on - strand at 771.175 kb on - strand at 771.259 kb on + strand at 771.259 kb on + strand at 771.260 kb on - strand at 771.324 kb on + strand at 771.334 kb on + strand at 771.334 kb on + strand at 771.335 kb on - strand at 771.335 kb on - strand at 771.335 kb on - strand at 771.335 kb on - strand at 771.402 kb on - strand, within RR42_RS03475 at 771.402 kb on - strand, within RR42_RS03475 at 771.516 kb on + strand, within RR42_RS03475 at 771.516 kb on + strand, within RR42_RS03475 at 771.516 kb on + strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.517 kb on - strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.524 kb on + strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.525 kb on - strand, within RR42_RS03475 at 771.591 kb on - strand, within RR42_RS03475 at 771.787 kb on - strand, within RR42_RS03475 at 772.066 kb on + strand, within RR42_RS03475 at 772.066 kb on + strand, within RR42_RS03475 at 772.066 kb on + strand, within RR42_RS03475 at 772.067 kb on - strand, within RR42_RS03475 at 772.067 kb on - strand, within RR42_RS03475 at 772.463 kb on + strand, within RR42_RS03475 at 772.464 kb on - strand, within RR42_RS03475 at 772.605 kb on - strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.657 kb on + strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.658 kb on - strand at 772.661 kb on - strand at 772.661 kb on - strand at 773.357 kb on + strand at 773.477 kb on - strand at 773.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 770,257 + -1.5 770,258 - -0.1 770,319 + -0.3 770,526 - +1.3 770,534 + +0.2 770,534 + +0.2 770,588 - -0.2 770,612 - -0.1 770,624 + -1.8 770,770 + -0.2 770,946 - +0.3 771,058 + -0.2 771,058 + -0.5 771,137 - +0.7 771,174 + -0.4 771,174 + +0.0 771,175 - -0.2 771,175 - -0.2 771,175 - -0.5 771,259 + -1.3 771,259 + +0.3 771,260 - -1.6 771,324 + +0.7 771,334 + +1.3 771,334 + +0.5 771,335 - -0.5 771,335 - -1.0 771,335 - +1.3 771,335 - -0.9 771,402 - RR42_RS03475 0.13 +1.2 771,402 - RR42_RS03475 0.13 -0.1 771,516 + RR42_RS03475 0.21 -0.1 771,516 + RR42_RS03475 0.21 +6.9 771,516 + RR42_RS03475 0.21 +0.4 771,517 - RR42_RS03475 0.21 -0.8 771,517 - RR42_RS03475 0.21 +0.5 771,517 - RR42_RS03475 0.21 -0.1 771,517 - RR42_RS03475 0.21 -1.2 771,517 - RR42_RS03475 0.21 +1.3 771,524 + RR42_RS03475 0.22 +0.5 771,524 + RR42_RS03475 0.22 +0.7 771,524 + RR42_RS03475 0.22 -0.1 771,524 + RR42_RS03475 0.22 -0.8 771,524 + RR42_RS03475 0.22 -0.3 771,524 + RR42_RS03475 0.22 -0.2 771,525 - RR42_RS03475 0.22 -0.9 771,525 - RR42_RS03475 0.22 +0.8 771,525 - RR42_RS03475 0.22 -0.4 771,525 - RR42_RS03475 0.22 -0.6 771,525 - RR42_RS03475 0.22 -1.4 771,591 - RR42_RS03475 0.27 +1.4 771,787 - RR42_RS03475 0.41 -2.4 772,066 + RR42_RS03475 0.61 +0.1 772,066 + RR42_RS03475 0.61 +1.7 772,066 + RR42_RS03475 0.61 -1.4 772,067 - RR42_RS03475 0.61 -0.6 772,067 - RR42_RS03475 0.61 -0.2 772,463 + RR42_RS03475 0.90 -0.1 772,464 - RR42_RS03475 0.90 -0.9 772,605 - +0.4 772,657 + +1.3 772,657 + -0.3 772,657 + +0.4 772,658 - -0.8 772,658 - +0.4 772,658 - -0.4 772,661 - -0.6 772,661 - +0.3 773,357 + -0.5 773,477 - -0.1 773,499 - -0.0
Or see this region's nucleotide sequence