Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03425

Experiment: R2A with Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03420 and RR42_RS03425 are separated by 95 nucleotidesRR42_RS03425 and RR42_RS03430 are separated by 104 nucleotides RR42_RS03420: RR42_RS03420 - bile acid:sodium symporter, at 760,908 to 761,930 _RS03420 RR42_RS03425: RR42_RS03425 - LysR family transcriptional regulator, at 762,026 to 762,934 _RS03425 RR42_RS03430: RR42_RS03430 - SAM-dependent methyltransferase, at 763,039 to 763,797 _RS03430 Position (kb) 762 763Strain fitness (log2 ratio) -2 -1 0 1 2 3at 761.227 kb on + strand, within RR42_RS03420at 761.227 kb on + strand, within RR42_RS03420at 761.228 kb on - strand, within RR42_RS03420at 761.228 kb on - strand, within RR42_RS03420at 761.228 kb on - strand, within RR42_RS03420at 761.272 kb on + strand, within RR42_RS03420at 761.273 kb on - strand, within RR42_RS03420at 761.273 kb on - strand, within RR42_RS03420at 761.426 kb on + strand, within RR42_RS03420at 761.426 kb on + strand, within RR42_RS03420at 761.427 kb on - strand, within RR42_RS03420at 761.590 kb on + strand, within RR42_RS03420at 761.590 kb on + strand, within RR42_RS03420at 761.590 kb on + strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.874 kb on + strandat 761.874 kb on + strandat 761.874 kb on + strandat 761.874 kb on + strandat 761.875 kb on - strandat 761.946 kb on + strandat 761.963 kb on - strandat 762.033 kb on - strandat 762.296 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.465 kb on + strand, within RR42_RS03425at 762.465 kb on + strand, within RR42_RS03425at 762.466 kb on - strand, within RR42_RS03425at 762.597 kb on + strand, within RR42_RS03425at 762.597 kb on + strand, within RR42_RS03425at 762.598 kb on - strand, within RR42_RS03425at 762.891 kb on + strandat 762.891 kb on + strandat 762.891 kb on + strandat 762.892 kb on - strandat 762.952 kb on + strandat 762.968 kb on + strandat 762.976 kb on + strandat 763.017 kb on - strandat 763.024 kb on + strandat 763.040 kb on + strandat 763.103 kb on + strandat 763.114 kb on + strandat 763.114 kb on + strandat 763.283 kb on + strand, within RR42_RS03430at 763.293 kb on + strand, within RR42_RS03430at 763.406 kb on + strand, within RR42_RS03430at 763.592 kb on + strand, within RR42_RS03430at 763.593 kb on - strand, within RR42_RS03430at 763.593 kb on - strand, within RR42_RS03430at 763.745 kb on + strandat 763.893 kb on - strandat 763.897 kb on + strandat 763.897 kb on + strandat 763.897 kb on + strandat 763.897 kb on + strandat 763.898 kb on - strandat 763.898 kb on - strandat 763.898 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
remove
761,227 + RR42_RS03420 0.31 -0.6
761,227 + RR42_RS03420 0.31 -0.1
761,228 - RR42_RS03420 0.31 -1.0
761,228 - RR42_RS03420 0.31 +1.2
761,228 - RR42_RS03420 0.31 +2.3
761,272 + RR42_RS03420 0.36 +0.5
761,273 - RR42_RS03420 0.36 +0.6
761,273 - RR42_RS03420 0.36 -0.0
761,426 + RR42_RS03420 0.51 +0.4
761,426 + RR42_RS03420 0.51 -0.0
761,427 - RR42_RS03420 0.51 -0.7
761,590 + RR42_RS03420 0.67 -0.3
761,590 + RR42_RS03420 0.67 +0.6
761,590 + RR42_RS03420 0.67 -0.6
761,591 - RR42_RS03420 0.67 -1.3
761,591 - RR42_RS03420 0.67 -0.0
761,591 - RR42_RS03420 0.67 +1.1
761,591 - RR42_RS03420 0.67 -0.1
761,591 - RR42_RS03420 0.67 +1.3
761,674 + RR42_RS03420 0.75 +0.3
761,674 + RR42_RS03420 0.75 +0.1
761,674 + RR42_RS03420 0.75 +0.1
761,674 + RR42_RS03420 0.75 -1.0
761,674 + RR42_RS03420 0.75 -0.5
761,675 - RR42_RS03420 0.75 -0.5
761,675 - RR42_RS03420 0.75 +2.0
761,675 - RR42_RS03420 0.75 +2.6
761,675 - RR42_RS03420 0.75 +0.7
761,874 + +0.5
761,874 + -0.6
761,874 + -0.1
761,874 + +0.3
761,875 - -1.8
761,946 + +1.3
761,963 - +0.9
762,033 - -0.4
762,296 + RR42_RS03425 0.30 +2.9
762,356 + RR42_RS03425 0.36 +0.1
762,356 + RR42_RS03425 0.36 -1.7
762,356 + RR42_RS03425 0.36 +0.4
762,356 + RR42_RS03425 0.36 -0.6
762,356 + RR42_RS03425 0.36 -1.8
762,356 + RR42_RS03425 0.36 +0.2
762,357 - RR42_RS03425 0.36 +0.3
762,357 - RR42_RS03425 0.36 +0.8
762,357 - RR42_RS03425 0.36 -1.6
762,357 - RR42_RS03425 0.36 -0.1
762,357 - RR42_RS03425 0.36 +0.3
762,357 - RR42_RS03425 0.36 -1.4
762,357 - RR42_RS03425 0.36 -0.1
762,357 - RR42_RS03425 0.36 +0.3
762,357 - RR42_RS03425 0.36 +0.3
762,465 + RR42_RS03425 0.48 +1.0
762,465 + RR42_RS03425 0.48 +0.1
762,466 - RR42_RS03425 0.48 -0.2
762,597 + RR42_RS03425 0.63 +0.3
762,597 + RR42_RS03425 0.63 +1.0
762,598 - RR42_RS03425 0.63 -0.2
762,891 + +0.6
762,891 + +0.7
762,891 + -0.0
762,892 - +0.5
762,952 + +1.9
762,968 + +0.7
762,976 + +0.2
763,017 - -0.3
763,024 + -0.1
763,040 + -0.3
763,103 + -0.7
763,114 + +1.3
763,114 + -1.9
763,283 + RR42_RS03430 0.32 -0.1
763,293 + RR42_RS03430 0.33 +0.0
763,406 + RR42_RS03430 0.48 +0.8
763,592 + RR42_RS03430 0.73 +1.3
763,593 - RR42_RS03430 0.73 -0.5
763,593 - RR42_RS03430 0.73 -0.7
763,745 + +0.1
763,893 - +0.5
763,897 + +0.5
763,897 + -0.9
763,897 + -0.3
763,897 + -0.4
763,898 - +0.4
763,898 - +1.9
763,898 - +2.3

Or see this region's nucleotide sequence