Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03155 and RR42_RS03160 are separated by 160 nucleotides RR42_RS03160 and RR42_RS03165 are separated by 57 nucleotides RR42_RS03165 and RR42_RS03170 are separated by 121 nucleotides
RR42_RS03155: RR42_RS03155 - alpha/beta hydrolase, at 697,188 to 698,174
_RS03155
RR42_RS03160: RR42_RS03160 - hypothetical protein, at 698,335 to 698,775
_RS03160
RR42_RS03165: RR42_RS03165 - ADP-heptose--LPS heptosyltransferase, at 698,833 to 699,855
_RS03165
RR42_RS03170: RR42_RS03170 - hypothetical protein, at 699,977 to 700,171
_RS03170
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.864 kb on + strand, within RR42_RS03155 at 697.966 kb on + strand, within RR42_RS03155 at 698.298 kb on + strand at 698.298 kb on + strand at 698.337 kb on - strand at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.447 kb on + strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.448 kb on - strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.462 kb on + strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.463 kb on - strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.538 kb on + strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.539 kb on - strand, within RR42_RS03160 at 698.705 kb on - strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.731 kb on + strand, within RR42_RS03160 at 698.732 kb on - strand at 698.732 kb on - strand at 698.732 kb on - strand at 698.732 kb on - strand at 700.017 kb on + strand, within RR42_RS03170 at 700.017 kb on + strand, within RR42_RS03170 at 700.018 kb on - strand, within RR42_RS03170 at 700.018 kb on - strand, within RR42_RS03170 at 700.032 kb on + strand, within RR42_RS03170 at 700.032 kb on + strand, within RR42_RS03170 at 700.086 kb on + strand, within RR42_RS03170 at 700.087 kb on - strand, within RR42_RS03170 at 700.087 kb on - strand, within RR42_RS03170 at 700.199 kb on - strand at 700.199 kb on - strand at 700.221 kb on - strand at 700.221 kb on - strand at 700.221 kb on - strand at 700.221 kb on - strand at 700.230 kb on + strand at 700.231 kb on - strand at 700.350 kb on - strand at 700.381 kb on + strand at 700.428 kb on + strand at 700.477 kb on + strand at 700.496 kb on - strand at 700.496 kb on - strand at 700.805 kb on + strand at 700.806 kb on - strand at 700.806 kb on - strand at 700.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 697,864 + RR42_RS03155 0.68 +0.5 697,864 + RR42_RS03155 0.68 -0.4 697,864 + RR42_RS03155 0.68 -0.1 697,864 + RR42_RS03155 0.68 +0.7 697,966 + RR42_RS03155 0.79 +0.1 698,298 + +0.8 698,298 + +0.4 698,337 - -1.1 698,447 + RR42_RS03160 0.25 +1.3 698,447 + RR42_RS03160 0.25 +0.9 698,447 + RR42_RS03160 0.25 -0.2 698,447 + RR42_RS03160 0.25 +0.5 698,447 + RR42_RS03160 0.25 +0.4 698,447 + RR42_RS03160 0.25 -0.5 698,448 - RR42_RS03160 0.26 -0.5 698,448 - RR42_RS03160 0.26 -0.0 698,448 - RR42_RS03160 0.26 +0.6 698,448 - RR42_RS03160 0.26 +0.6 698,462 + RR42_RS03160 0.29 -1.3 698,462 + RR42_RS03160 0.29 +0.1 698,462 + RR42_RS03160 0.29 -0.2 698,463 - RR42_RS03160 0.29 -0.5 698,463 - RR42_RS03160 0.29 -0.6 698,463 - RR42_RS03160 0.29 -0.1 698,463 - RR42_RS03160 0.29 -0.5 698,463 - RR42_RS03160 0.29 +0.0 698,538 + RR42_RS03160 0.46 +1.9 698,538 + RR42_RS03160 0.46 +0.8 698,538 + RR42_RS03160 0.46 +1.8 698,539 - RR42_RS03160 0.46 +0.9 698,539 - RR42_RS03160 0.46 -1.7 698,539 - RR42_RS03160 0.46 +1.2 698,705 - RR42_RS03160 0.84 +1.7 698,731 + RR42_RS03160 0.90 +0.0 698,731 + RR42_RS03160 0.90 +1.0 698,731 + RR42_RS03160 0.90 -0.0 698,731 + RR42_RS03160 0.90 +0.7 698,731 + RR42_RS03160 0.90 -0.9 698,731 + RR42_RS03160 0.90 -0.9 698,731 + RR42_RS03160 0.90 +1.1 698,732 - -0.8 698,732 - +0.6 698,732 - -1.3 698,732 - +0.7 700,017 + RR42_RS03170 0.21 -2.2 700,017 + RR42_RS03170 0.21 -1.2 700,018 - RR42_RS03170 0.21 -1.4 700,018 - RR42_RS03170 0.21 +0.3 700,032 + RR42_RS03170 0.28 -1.4 700,032 + RR42_RS03170 0.28 -2.3 700,086 + RR42_RS03170 0.56 -2.6 700,087 - RR42_RS03170 0.56 -0.7 700,087 - RR42_RS03170 0.56 +0.8 700,199 - -0.3 700,199 - -1.0 700,221 - +0.7 700,221 - +0.8 700,221 - +0.3 700,221 - -0.3 700,230 + -1.7 700,231 - +0.6 700,350 - +0.4 700,381 + -2.4 700,428 + +3.1 700,477 + +1.3 700,496 - +0.1 700,496 - -0.8 700,805 + -0.5 700,806 - +0.0 700,806 - -1.0 700,814 + +0.8
Or see this region's nucleotide sequence