Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03155

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03145 and RR42_RS03150 are separated by 48 nucleotidesRR42_RS03150 and RR42_RS03155 are separated by 77 nucleotidesRR42_RS03155 and RR42_RS03160 are separated by 160 nucleotidesRR42_RS03160 and RR42_RS03165 are separated by 57 nucleotides RR42_RS03145: RR42_RS03145 - peptidase M48, at 694,642 to 696,450 _RS03145 RR42_RS03150: RR42_RS03150 - hypothetical protein, at 696,499 to 697,110 _RS03150 RR42_RS03155: RR42_RS03155 - alpha/beta hydrolase, at 697,188 to 698,174 _RS03155 RR42_RS03160: RR42_RS03160 - hypothetical protein, at 698,335 to 698,775 _RS03160 RR42_RS03165: RR42_RS03165 - ADP-heptose--LPS heptosyltransferase, at 698,833 to 699,855 _RS03165 Position (kb) 697 698 699Strain fitness (log2 ratio) -2 -1 0 1 2at 696.236 kb on - strand, within RR42_RS03145at 696.236 kb on - strand, within RR42_RS03145at 696.286 kb on + strandat 696.286 kb on + strandat 696.286 kb on + strandat 696.286 kb on + strandat 696.286 kb on + strandat 696.287 kb on - strandat 696.287 kb on - strandat 696.305 kb on - strandat 696.361 kb on + strandat 696.362 kb on - strandat 696.445 kb on - strandat 696.445 kb on - strandat 696.445 kb on - strandat 696.614 kb on - strand, within RR42_RS03150at 696.663 kb on + strand, within RR42_RS03150at 696.664 kb on - strand, within RR42_RS03150at 696.664 kb on - strand, within RR42_RS03150at 696.864 kb on - strand, within RR42_RS03150at 696.864 kb on - strand, within RR42_RS03150at 696.905 kb on + strand, within RR42_RS03150at 697.004 kb on + strand, within RR42_RS03150at 697.005 kb on - strand, within RR42_RS03150at 697.055 kb on + strandat 697.066 kb on + strandat 697.168 kb on - strandat 697.168 kb on - strandat 697.239 kb on - strandat 697.277 kb on + strandat 697.277 kb on + strandat 697.278 kb on - strandat 697.370 kb on - strand, within RR42_RS03155at 697.509 kb on - strand, within RR42_RS03155at 697.509 kb on - strand, within RR42_RS03155at 697.522 kb on + strand, within RR42_RS03155at 697.627 kb on + strand, within RR42_RS03155at 697.627 kb on + strand, within RR42_RS03155at 697.627 kb on + strand, within RR42_RS03155at 697.628 kb on - strand, within RR42_RS03155at 697.807 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.966 kb on + strand, within RR42_RS03155at 698.298 kb on + strandat 698.298 kb on + strandat 698.337 kb on - strandat 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.462 kb on + strand, within RR42_RS03160at 698.462 kb on + strand, within RR42_RS03160at 698.462 kb on + strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.538 kb on + strand, within RR42_RS03160at 698.538 kb on + strand, within RR42_RS03160at 698.538 kb on + strand, within RR42_RS03160at 698.539 kb on - strand, within RR42_RS03160at 698.539 kb on - strand, within RR42_RS03160at 698.539 kb on - strand, within RR42_RS03160at 698.705 kb on - strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.732 kb on - strandat 698.732 kb on - strandat 698.732 kb on - strandat 698.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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696,236 - RR42_RS03145 0.88 -2.5
696,236 - RR42_RS03145 0.88 -1.7
696,286 + -0.2
696,286 + -1.3
696,286 + -0.3
696,286 + -1.3
696,286 + -0.2
696,287 - -1.4
696,287 - -0.5
696,305 - -2.0
696,361 + -0.7
696,362 - -2.1
696,445 - -0.3
696,445 - +0.4
696,445 - +0.6
696,614 - RR42_RS03150 0.19 +0.3
696,663 + RR42_RS03150 0.27 -0.2
696,664 - RR42_RS03150 0.27 +1.1
696,664 - RR42_RS03150 0.27 +0.4
696,864 - RR42_RS03150 0.60 -1.0
696,864 - RR42_RS03150 0.60 -0.5
696,905 + RR42_RS03150 0.66 +0.1
697,004 + RR42_RS03150 0.83 -0.5
697,005 - RR42_RS03150 0.83 +0.2
697,055 + -0.4
697,066 + -0.1
697,168 - +0.5
697,168 - +0.3
697,239 - +0.6
697,277 + +0.9
697,277 + +0.9
697,278 - +1.4
697,370 - RR42_RS03155 0.18 -0.5
697,509 - RR42_RS03155 0.33 -1.0
697,509 - RR42_RS03155 0.33 -0.8
697,522 + RR42_RS03155 0.34 +0.2
697,627 + RR42_RS03155 0.44 -0.8
697,627 + RR42_RS03155 0.44 +0.8
697,627 + RR42_RS03155 0.44 +1.2
697,628 - RR42_RS03155 0.45 +0.6
697,807 + RR42_RS03155 0.63 +0.3
697,864 + RR42_RS03155 0.68 +0.5
697,864 + RR42_RS03155 0.68 -0.4
697,864 + RR42_RS03155 0.68 -0.1
697,864 + RR42_RS03155 0.68 +0.7
697,966 + RR42_RS03155 0.79 +0.1
698,298 + +0.8
698,298 + +0.4
698,337 - -1.1
698,447 + RR42_RS03160 0.25 +1.3
698,447 + RR42_RS03160 0.25 +0.9
698,447 + RR42_RS03160 0.25 -0.2
698,447 + RR42_RS03160 0.25 +0.5
698,447 + RR42_RS03160 0.25 +0.4
698,447 + RR42_RS03160 0.25 -0.5
698,448 - RR42_RS03160 0.26 -0.5
698,448 - RR42_RS03160 0.26 -0.0
698,448 - RR42_RS03160 0.26 +0.6
698,448 - RR42_RS03160 0.26 +0.6
698,462 + RR42_RS03160 0.29 -1.3
698,462 + RR42_RS03160 0.29 +0.1
698,462 + RR42_RS03160 0.29 -0.2
698,463 - RR42_RS03160 0.29 -0.5
698,463 - RR42_RS03160 0.29 -0.6
698,463 - RR42_RS03160 0.29 -0.1
698,463 - RR42_RS03160 0.29 -0.5
698,463 - RR42_RS03160 0.29 +0.0
698,538 + RR42_RS03160 0.46 +1.9
698,538 + RR42_RS03160 0.46 +0.8
698,538 + RR42_RS03160 0.46 +1.8
698,539 - RR42_RS03160 0.46 +0.9
698,539 - RR42_RS03160 0.46 -1.7
698,539 - RR42_RS03160 0.46 +1.2
698,705 - RR42_RS03160 0.84 +1.7
698,731 + RR42_RS03160 0.90 +0.0
698,731 + RR42_RS03160 0.90 +1.0
698,731 + RR42_RS03160 0.90 -0.0
698,731 + RR42_RS03160 0.90 +0.7
698,731 + RR42_RS03160 0.90 -0.9
698,731 + RR42_RS03160 0.90 -0.9
698,731 + RR42_RS03160 0.90 +1.1
698,732 - -0.8
698,732 - +0.6
698,732 - -1.3
698,732 - +0.7

Or see this region's nucleotide sequence