Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03125 and RR42_RS03130 are separated by 470 nucleotides RR42_RS03130 and RR42_RS03135 are separated by 13 nucleotides
RR42_RS03125: RR42_RS03125 - hypothetical protein, at 690,812 to 691,306
_RS03125
RR42_RS03130: RR42_RS03130 - hypothetical protein, at 691,777 to 692,166
_RS03130
RR42_RS03135: RR42_RS03135 - hypothetical protein, at 692,180 to 692,779
_RS03135
Position (kb) 692
693 Strain fitness (log2 ratio) -1
0
1
2
3 at 691.379 kb on + strand at 691.430 kb on + strand at 691.481 kb on + strand at 691.498 kb on - strand at 691.778 kb on + strand at 691.778 kb on + strand at 691.778 kb on + strand at 691.868 kb on + strand, within RR42_RS03130 at 691.869 kb on - strand, within RR42_RS03130 at 692.102 kb on + strand, within RR42_RS03130 at 692.102 kb on + strand, within RR42_RS03130 at 692.103 kb on - strand, within RR42_RS03130 at 692.182 kb on - strand at 692.193 kb on + strand at 692.193 kb on + strand at 692.193 kb on + strand at 692.194 kb on - strand at 692.202 kb on + strand at 692.203 kb on - strand at 692.203 kb on - strand at 692.203 kb on - strand at 692.203 kb on - strand at 692.280 kb on + strand, within RR42_RS03135 at 692.305 kb on + strand, within RR42_RS03135 at 692.359 kb on + strand, within RR42_RS03135 at 692.360 kb on - strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.362 kb on - strand, within RR42_RS03135 at 692.362 kb on - strand, within RR42_RS03135 at 692.368 kb on - strand, within RR42_RS03135 at 692.505 kb on + strand, within RR42_RS03135 at 692.528 kb on + strand, within RR42_RS03135 at 692.528 kb on + strand, within RR42_RS03135 at 692.529 kb on - strand, within RR42_RS03135 at 692.533 kb on + strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.538 kb on - strand, within RR42_RS03135 at 692.538 kb on - strand, within RR42_RS03135 at 692.549 kb on + strand, within RR42_RS03135 at 692.549 kb on + strand, within RR42_RS03135 at 692.767 kb on + strand at 692.767 kb on + strand at 692.767 kb on + strand at 692.767 kb on + strand at 692.768 kb on - strand at 692.794 kb on + strand at 692.795 kb on - strand at 692.846 kb on - strand at 692.846 kb on - strand at 692.960 kb on - strand at 692.994 kb on - strand at 693.084 kb on - strand at 693.101 kb on - strand at 693.135 kb on + strand at 693.204 kb on - strand at 693.204 kb on - strand at 693.204 kb on - strand at 693.286 kb on + strand at 693.286 kb on + strand at 693.286 kb on + strand at 693.287 kb on - strand at 693.287 kb on - strand at 693.287 kb on - strand at 693.289 kb on - strand at 693.366 kb on - strand at 693.378 kb on + strand at 693.390 kb on - strand at 693.397 kb on + strand at 693.397 kb on + strand at 693.412 kb on + strand at 693.412 kb on + strand at 693.413 kb on - strand at 693.465 kb on + strand at 693.466 kb on - strand at 693.466 kb on - strand at 693.529 kb on + strand at 693.529 kb on + strand at 693.529 kb on + strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.543 kb on + strand at 693.544 kb on - strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.550 kb on - strand at 693.615 kb on - strand at 693.661 kb on - strand at 693.684 kb on + strand at 693.685 kb on - strand at 693.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 691,379 + -0.5 691,430 + +0.2 691,481 + +0.1 691,498 - +0.7 691,778 + -0.3 691,778 + +0.3 691,778 + +0.6 691,868 + RR42_RS03130 0.23 -0.5 691,869 - RR42_RS03130 0.24 +0.4 692,102 + RR42_RS03130 0.83 -0.6 692,102 + RR42_RS03130 0.83 -0.7 692,103 - RR42_RS03130 0.84 -1.4 692,182 - +0.3 692,193 + -0.2 692,193 + +2.9 692,193 + +0.3 692,194 - -0.0 692,202 + +0.6 692,203 - +0.3 692,203 - -0.3 692,203 - +0.3 692,203 - -1.1 692,280 + RR42_RS03135 0.17 +2.3 692,305 + RR42_RS03135 0.21 +0.1 692,359 + RR42_RS03135 0.30 -0.5 692,360 - RR42_RS03135 0.30 +0.2 692,361 + RR42_RS03135 0.30 +0.2 692,361 + RR42_RS03135 0.30 +1.1 692,361 + RR42_RS03135 0.30 -0.3 692,361 + RR42_RS03135 0.30 +0.2 692,362 - RR42_RS03135 0.30 -1.5 692,362 - RR42_RS03135 0.30 +1.3 692,368 - RR42_RS03135 0.31 +0.7 692,505 + RR42_RS03135 0.54 -0.6 692,528 + RR42_RS03135 0.58 +0.3 692,528 + RR42_RS03135 0.58 +0.3 692,529 - RR42_RS03135 0.58 -0.8 692,533 + RR42_RS03135 0.59 +0.3 692,534 - RR42_RS03135 0.59 +1.1 692,534 - RR42_RS03135 0.59 +0.2 692,534 - RR42_RS03135 0.59 +0.2 692,534 - RR42_RS03135 0.59 +0.2 692,534 - RR42_RS03135 0.59 +0.3 692,534 - RR42_RS03135 0.59 +1.1 692,534 - RR42_RS03135 0.59 +0.9 692,537 + RR42_RS03135 0.59 +0.7 692,537 + RR42_RS03135 0.59 +1.1 692,537 + RR42_RS03135 0.59 +0.7 692,537 + RR42_RS03135 0.59 +0.6 692,538 - RR42_RS03135 0.60 +0.1 692,538 - RR42_RS03135 0.60 +0.1 692,549 + RR42_RS03135 0.61 +0.3 692,549 + RR42_RS03135 0.61 +0.0 692,767 + -1.1 692,767 + -0.1 692,767 + +0.3 692,767 + -0.3 692,768 - +0.2 692,794 + -0.1 692,795 - +1.5 692,846 - +0.0 692,846 - -0.7 692,960 - -0.6 692,994 - +0.2 693,084 - +1.3 693,101 - +0.0 693,135 + -0.0 693,204 - -1.5 693,204 - -0.4 693,204 - +0.3 693,286 + +0.3 693,286 + +0.3 693,286 + +3.3 693,287 - +0.1 693,287 - +0.4 693,287 - -0.1 693,289 - -0.0 693,366 - +0.1 693,378 + +1.3 693,390 - +0.3 693,397 + +0.6 693,397 + -0.4 693,412 + -0.0 693,412 + +0.9 693,413 - -0.3 693,465 + -0.3 693,466 - -1.1 693,466 - +0.3 693,529 + +0.3 693,529 + -0.6 693,529 + +0.6 693,530 - +1.2 693,530 - -0.5 693,530 - -1.2 693,530 - +0.1 693,531 + -0.3 693,531 + -0.3 693,531 + -0.1 693,531 + -0.3 693,532 - -0.3 693,532 - +0.3 693,532 - -0.0 693,532 - +0.7 693,532 - -0.0 693,532 - +0.6 693,532 - +1.0 693,532 - +0.6 693,534 - +0.9 693,534 - +0.1 693,534 - +0.3 693,534 - -0.2 693,534 - -0.1 693,543 + +1.3 693,544 - -0.4 693,549 + -0.4 693,549 + -0.6 693,549 + +1.3 693,549 + -1.7 693,550 - +0.0 693,615 - -1.1 693,661 - -0.4 693,684 + +1.6 693,685 - +2.1 693,723 - -0.1
Or see this region's nucleotide sequence