Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03130

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03125 and RR42_RS03130 are separated by 470 nucleotidesRR42_RS03130 and RR42_RS03135 are separated by 13 nucleotides RR42_RS03125: RR42_RS03125 - hypothetical protein, at 690,812 to 691,306 _RS03125 RR42_RS03130: RR42_RS03130 - hypothetical protein, at 691,777 to 692,166 _RS03130 RR42_RS03135: RR42_RS03135 - hypothetical protein, at 692,180 to 692,779 _RS03135 Position (kb) 691 692 693Strain fitness (log2 ratio) -2 -1 0 1 2 3at 690.865 kb on + strand, within RR42_RS03125at 690.865 kb on + strand, within RR42_RS03125at 690.865 kb on + strand, within RR42_RS03125at 690.866 kb on - strand, within RR42_RS03125at 690.866 kb on - strand, within RR42_RS03125at 690.866 kb on - strand, within RR42_RS03125at 690.867 kb on + strand, within RR42_RS03125at 690.868 kb on - strand, within RR42_RS03125at 690.868 kb on - strand, within RR42_RS03125at 690.868 kb on - strand, within RR42_RS03125at 690.868 kb on - strand, within RR42_RS03125at 690.868 kb on - strand, within RR42_RS03125at 690.874 kb on - strand, within RR42_RS03125at 690.876 kb on + strand, within RR42_RS03125at 690.876 kb on + strand, within RR42_RS03125at 690.876 kb on + strand, within RR42_RS03125at 690.900 kb on + strand, within RR42_RS03125at 690.901 kb on - strand, within RR42_RS03125at 690.906 kb on + strand, within RR42_RS03125at 690.906 kb on + strand, within RR42_RS03125at 690.907 kb on - strand, within RR42_RS03125at 690.907 kb on - strand, within RR42_RS03125at 690.954 kb on + strand, within RR42_RS03125at 690.984 kb on + strand, within RR42_RS03125at 690.984 kb on + strand, within RR42_RS03125at 690.985 kb on - strand, within RR42_RS03125at 690.985 kb on - strand, within RR42_RS03125at 691.026 kb on + strand, within RR42_RS03125at 691.048 kb on - strand, within RR42_RS03125at 691.048 kb on - strand, within RR42_RS03125at 691.050 kb on + strand, within RR42_RS03125at 691.051 kb on - strand, within RR42_RS03125at 691.101 kb on + strand, within RR42_RS03125at 691.102 kb on - strand, within RR42_RS03125at 691.102 kb on - strand, within RR42_RS03125at 691.102 kb on - strand, within RR42_RS03125at 691.102 kb on - strand, within RR42_RS03125at 691.102 kb on - strand, within RR42_RS03125at 691.102 kb on - strand, within RR42_RS03125at 691.109 kb on + strand, within RR42_RS03125at 691.109 kb on + strand, within RR42_RS03125at 691.110 kb on - strand, within RR42_RS03125at 691.379 kb on + strandat 691.430 kb on + strandat 691.481 kb on + strandat 691.498 kb on - strandat 691.778 kb on + strandat 691.778 kb on + strandat 691.778 kb on + strandat 691.868 kb on + strand, within RR42_RS03130at 691.869 kb on - strand, within RR42_RS03130at 692.102 kb on + strand, within RR42_RS03130at 692.102 kb on + strand, within RR42_RS03130at 692.103 kb on - strand, within RR42_RS03130at 692.182 kb on - strandat 692.193 kb on + strandat 692.193 kb on + strandat 692.193 kb on + strandat 692.194 kb on - strandat 692.202 kb on + strandat 692.203 kb on - strandat 692.203 kb on - strandat 692.203 kb on - strandat 692.203 kb on - strandat 692.280 kb on + strand, within RR42_RS03135at 692.305 kb on + strand, within RR42_RS03135at 692.359 kb on + strand, within RR42_RS03135at 692.360 kb on - strand, within RR42_RS03135at 692.361 kb on + strand, within RR42_RS03135at 692.361 kb on + strand, within RR42_RS03135at 692.361 kb on + strand, within RR42_RS03135at 692.361 kb on + strand, within RR42_RS03135at 692.362 kb on - strand, within RR42_RS03135at 692.362 kb on - strand, within RR42_RS03135at 692.368 kb on - strand, within RR42_RS03135at 692.505 kb on + strand, within RR42_RS03135at 692.528 kb on + strand, within RR42_RS03135at 692.528 kb on + strand, within RR42_RS03135at 692.529 kb on - strand, within RR42_RS03135at 692.533 kb on + strand, within RR42_RS03135at 692.534 kb on - strand, within RR42_RS03135at 692.534 kb on - strand, within RR42_RS03135at 692.534 kb on - strand, within RR42_RS03135at 692.534 kb on - strand, within RR42_RS03135at 692.534 kb on - strand, within RR42_RS03135at 692.534 kb on - strand, within RR42_RS03135at 692.534 kb on - strand, within RR42_RS03135at 692.537 kb on + strand, within RR42_RS03135at 692.537 kb on + strand, within RR42_RS03135at 692.537 kb on + strand, within RR42_RS03135at 692.537 kb on + strand, within RR42_RS03135at 692.538 kb on - strand, within RR42_RS03135at 692.538 kb on - strand, within RR42_RS03135at 692.549 kb on + strand, within RR42_RS03135at 692.549 kb on + strand, within RR42_RS03135at 692.767 kb on + strandat 692.767 kb on + strandat 692.767 kb on + strandat 692.767 kb on + strandat 692.768 kb on - strandat 692.794 kb on + strandat 692.795 kb on - strandat 692.846 kb on - strandat 692.846 kb on - strandat 692.960 kb on - strandat 692.994 kb on - strandat 693.084 kb on - strandat 693.101 kb on - strandat 693.135 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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690,865 + RR42_RS03125 0.11 -0.4
690,865 + RR42_RS03125 0.11 +0.3
690,865 + RR42_RS03125 0.11 +0.7
690,866 - RR42_RS03125 0.11 -2.5
690,866 - RR42_RS03125 0.11 -0.7
690,866 - RR42_RS03125 0.11 +1.1
690,867 + RR42_RS03125 0.11 +0.0
690,868 - RR42_RS03125 0.11 -2.1
690,868 - RR42_RS03125 0.11 +0.6
690,868 - RR42_RS03125 0.11 -0.2
690,868 - RR42_RS03125 0.11 +0.8
690,868 - RR42_RS03125 0.11 +1.9
690,874 - RR42_RS03125 0.13 -2.6
690,876 + RR42_RS03125 0.13 -2.7
690,876 + RR42_RS03125 0.13 +1.3
690,876 + RR42_RS03125 0.13 -0.1
690,900 + RR42_RS03125 0.18 +0.0
690,901 - RR42_RS03125 0.18 -0.7
690,906 + RR42_RS03125 0.19 +0.2
690,906 + RR42_RS03125 0.19 -0.4
690,907 - RR42_RS03125 0.19 -0.7
690,907 - RR42_RS03125 0.19 +0.1
690,954 + RR42_RS03125 0.29 -2.6
690,984 + RR42_RS03125 0.35 -0.6
690,984 + RR42_RS03125 0.35 -0.4
690,985 - RR42_RS03125 0.35 -2.1
690,985 - RR42_RS03125 0.35 +0.5
691,026 + RR42_RS03125 0.43 +0.3
691,048 - RR42_RS03125 0.48 -2.0
691,048 - RR42_RS03125 0.48 -0.1
691,050 + RR42_RS03125 0.48 +0.3
691,051 - RR42_RS03125 0.48 -0.5
691,101 + RR42_RS03125 0.58 -0.2
691,102 - RR42_RS03125 0.59 -1.0
691,102 - RR42_RS03125 0.59 -2.1
691,102 - RR42_RS03125 0.59 +1.5
691,102 - RR42_RS03125 0.59 +0.3
691,102 - RR42_RS03125 0.59 -0.2
691,102 - RR42_RS03125 0.59 -0.5
691,109 + RR42_RS03125 0.60 +0.3
691,109 + RR42_RS03125 0.60 -0.0
691,110 - RR42_RS03125 0.60 -0.0
691,379 + -0.5
691,430 + +0.2
691,481 + +0.1
691,498 - +0.7
691,778 + -0.3
691,778 + +0.3
691,778 + +0.6
691,868 + RR42_RS03130 0.23 -0.5
691,869 - RR42_RS03130 0.24 +0.4
692,102 + RR42_RS03130 0.83 -0.6
692,102 + RR42_RS03130 0.83 -0.7
692,103 - RR42_RS03130 0.84 -1.4
692,182 - +0.3
692,193 + -0.2
692,193 + +2.9
692,193 + +0.3
692,194 - -0.0
692,202 + +0.6
692,203 - +0.3
692,203 - -0.3
692,203 - +0.3
692,203 - -1.1
692,280 + RR42_RS03135 0.17 +2.3
692,305 + RR42_RS03135 0.21 +0.1
692,359 + RR42_RS03135 0.30 -0.5
692,360 - RR42_RS03135 0.30 +0.2
692,361 + RR42_RS03135 0.30 +0.2
692,361 + RR42_RS03135 0.30 +1.1
692,361 + RR42_RS03135 0.30 -0.3
692,361 + RR42_RS03135 0.30 +0.2
692,362 - RR42_RS03135 0.30 -1.5
692,362 - RR42_RS03135 0.30 +1.3
692,368 - RR42_RS03135 0.31 +0.7
692,505 + RR42_RS03135 0.54 -0.6
692,528 + RR42_RS03135 0.58 +0.3
692,528 + RR42_RS03135 0.58 +0.3
692,529 - RR42_RS03135 0.58 -0.8
692,533 + RR42_RS03135 0.59 +0.3
692,534 - RR42_RS03135 0.59 +1.1
692,534 - RR42_RS03135 0.59 +0.2
692,534 - RR42_RS03135 0.59 +0.2
692,534 - RR42_RS03135 0.59 +0.2
692,534 - RR42_RS03135 0.59 +0.3
692,534 - RR42_RS03135 0.59 +1.1
692,534 - RR42_RS03135 0.59 +0.9
692,537 + RR42_RS03135 0.59 +0.7
692,537 + RR42_RS03135 0.59 +1.1
692,537 + RR42_RS03135 0.59 +0.7
692,537 + RR42_RS03135 0.59 +0.6
692,538 - RR42_RS03135 0.60 +0.1
692,538 - RR42_RS03135 0.60 +0.1
692,549 + RR42_RS03135 0.61 +0.3
692,549 + RR42_RS03135 0.61 +0.0
692,767 + -1.1
692,767 + -0.1
692,767 + +0.3
692,767 + -0.3
692,768 - +0.2
692,794 + -0.1
692,795 - +1.5
692,846 - +0.0
692,846 - -0.7
692,960 - -0.6
692,994 - +0.2
693,084 - +1.3
693,101 - +0.0
693,135 + -0.0

Or see this region's nucleotide sequence