Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02795 and RR42_RS02800 are separated by 1 nucleotides RR42_RS02800 and RR42_RS02805 are separated by 116 nucleotides RR42_RS02805 and RR42_RS02810 overlap by 4 nucleotides RR42_RS02810 and RR42_RS02815 are separated by 17 nucleotides
RR42_RS02795: RR42_RS02795 - multidrug DMT transporter permease, at 623,262 to 624,170
_RS02795
RR42_RS02800: RR42_RS02800 - glyoxalase I, at 624,172 to 624,579
_RS02800
RR42_RS02805: RR42_RS02805 - metal-dependent hydrolase, at 624,696 to 625,580
_RS02805
RR42_RS02810: RR42_RS02810 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 625,577 to 626,329
_RS02810
RR42_RS02815: RR42_RS02815 - D,D-heptose 1,7-bisphosphate phosphatase, at 626,347 to 626,925
_RS02815
Position (kb) 624
625
626 Strain fitness (log2 ratio) -2
-1
0
1 at 623.828 kb on + strand, within RR42_RS02795 at 624.224 kb on + strand, within RR42_RS02800 at 624.366 kb on - strand, within RR42_RS02800 at 624.383 kb on + strand, within RR42_RS02800 at 624.398 kb on + strand, within RR42_RS02800 at 624.398 kb on + strand, within RR42_RS02800 at 624.399 kb on - strand, within RR42_RS02800 at 624.402 kb on + strand, within RR42_RS02800 at 624.402 kb on + strand, within RR42_RS02800 at 624.403 kb on - strand, within RR42_RS02800 at 624.404 kb on + strand, within RR42_RS02800 at 624.404 kb on + strand, within RR42_RS02800 at 624.405 kb on - strand, within RR42_RS02800 at 624.405 kb on - strand, within RR42_RS02800 at 624.405 kb on - strand, within RR42_RS02800 at 624.464 kb on + strand, within RR42_RS02800 at 624.464 kb on + strand, within RR42_RS02800 at 624.464 kb on + strand, within RR42_RS02800 at 624.465 kb on - strand, within RR42_RS02800 at 624.465 kb on - strand, within RR42_RS02800 at 624.465 kb on - strand, within RR42_RS02800 at 624.521 kb on + strand, within RR42_RS02800 at 624.522 kb on - strand, within RR42_RS02800 at 624.522 kb on - strand, within RR42_RS02800 at 624.597 kb on - strand at 624.619 kb on - strand at 624.641 kb on + strand at 624.641 kb on + strand at 624.642 kb on - strand at 624.698 kb on - strand at 624.951 kb on - strand, within RR42_RS02805 at 624.976 kb on + strand, within RR42_RS02805 at 624.976 kb on + strand, within RR42_RS02805 at 624.977 kb on - strand, within RR42_RS02805 at 624.980 kb on + strand, within RR42_RS02805 at 624.981 kb on - strand, within RR42_RS02805 at 624.981 kb on - strand, within RR42_RS02805 at 625.375 kb on + strand, within RR42_RS02805 at 625.781 kb on + strand, within RR42_RS02810 at 625.782 kb on - strand, within RR42_RS02810 at 625.828 kb on - strand, within RR42_RS02810 at 626.061 kb on + strand, within RR42_RS02810
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 623,828 + RR42_RS02795 0.62 +0.8 624,224 + RR42_RS02800 0.13 +1.2 624,366 - RR42_RS02800 0.48 +0.6 624,383 + RR42_RS02800 0.52 -0.5 624,398 + RR42_RS02800 0.55 -0.0 624,398 + RR42_RS02800 0.55 -0.4 624,399 - RR42_RS02800 0.56 -0.2 624,402 + RR42_RS02800 0.56 -0.4 624,402 + RR42_RS02800 0.56 -0.4 624,403 - RR42_RS02800 0.57 +0.8 624,404 + RR42_RS02800 0.57 -0.3 624,404 + RR42_RS02800 0.57 +0.5 624,405 - RR42_RS02800 0.57 -0.2 624,405 - RR42_RS02800 0.57 +0.1 624,405 - RR42_RS02800 0.57 +0.1 624,464 + RR42_RS02800 0.72 -1.7 624,464 + RR42_RS02800 0.72 -0.5 624,464 + RR42_RS02800 0.72 +0.7 624,465 - RR42_RS02800 0.72 +0.1 624,465 - RR42_RS02800 0.72 -1.8 624,465 - RR42_RS02800 0.72 -1.5 624,521 + RR42_RS02800 0.86 -0.9 624,522 - RR42_RS02800 0.86 +0.2 624,522 - RR42_RS02800 0.86 -0.0 624,597 - +0.2 624,619 - +0.3 624,641 + +0.5 624,641 + +0.3 624,642 - -0.1 624,698 - +0.4 624,951 - RR42_RS02805 0.29 -1.1 624,976 + RR42_RS02805 0.32 -0.3 624,976 + RR42_RS02805 0.32 +0.4 624,977 - RR42_RS02805 0.32 -0.7 624,980 + RR42_RS02805 0.32 -0.8 624,981 - RR42_RS02805 0.32 -0.7 624,981 - RR42_RS02805 0.32 -0.2 625,375 + RR42_RS02805 0.77 -0.1 625,781 + RR42_RS02810 0.27 -0.7 625,782 - RR42_RS02810 0.27 -2.5 625,828 - RR42_RS02810 0.33 +0.1 626,061 + RR42_RS02810 0.64 -1.5
Or see this region's nucleotide sequence