Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02565 and RR42_RS02570 are separated by 177 nucleotides RR42_RS02570 and RR42_RS02575 are separated by 364 nucleotides
RR42_RS02565: RR42_RS02565 - LysR family transcriptional regulator, at 576,333 to 577,304
_RS02565
RR42_RS02570: RR42_RS02570 - glutamate dehydrogenase, at 577,482 to 578,789
_RS02570
RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053
_RS02575
Position (kb) 577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 576.526 kb on - strand, within RR42_RS02565 at 576.526 kb on - strand, within RR42_RS02565 at 576.772 kb on - strand, within RR42_RS02565 at 576.772 kb on - strand, within RR42_RS02565 at 576.792 kb on - strand, within RR42_RS02565 at 576.813 kb on + strand, within RR42_RS02565 at 576.852 kb on + strand, within RR42_RS02565 at 576.852 kb on + strand, within RR42_RS02565 at 576.886 kb on - strand, within RR42_RS02565 at 576.930 kb on + strand, within RR42_RS02565 at 576.930 kb on + strand, within RR42_RS02565 at 576.930 kb on + strand, within RR42_RS02565 at 576.931 kb on - strand, within RR42_RS02565 at 576.931 kb on - strand, within RR42_RS02565 at 576.932 kb on + strand, within RR42_RS02565 at 576.932 kb on + strand, within RR42_RS02565 at 576.933 kb on - strand, within RR42_RS02565 at 577.012 kb on - strand, within RR42_RS02565 at 577.340 kb on + strand at 577.341 kb on - strand at 577.341 kb on - strand at 577.572 kb on + strand at 577.573 kb on - strand at 577.846 kb on - strand, within RR42_RS02570 at 577.846 kb on - strand, within RR42_RS02570 at 577.865 kb on + strand, within RR42_RS02570 at 577.923 kb on + strand, within RR42_RS02570 at 577.924 kb on - strand, within RR42_RS02570 at 577.924 kb on - strand, within RR42_RS02570 at 577.924 kb on - strand, within RR42_RS02570 at 577.924 kb on - strand, within RR42_RS02570 at 577.925 kb on + strand, within RR42_RS02570 at 577.925 kb on + strand, within RR42_RS02570 at 577.926 kb on - strand, within RR42_RS02570 at 578.022 kb on + strand, within RR42_RS02570 at 578.022 kb on + strand, within RR42_RS02570 at 578.023 kb on - strand, within RR42_RS02570 at 578.023 kb on - strand, within RR42_RS02570 at 578.023 kb on - strand, within RR42_RS02570 at 578.283 kb on + strand, within RR42_RS02570 at 578.283 kb on + strand, within RR42_RS02570 at 578.322 kb on + strand, within RR42_RS02570 at 578.322 kb on + strand, within RR42_RS02570 at 578.322 kb on + strand, within RR42_RS02570 at 578.323 kb on - strand, within RR42_RS02570 at 578.323 kb on - strand, within RR42_RS02570 at 578.323 kb on - strand, within RR42_RS02570 at 578.535 kb on - strand, within RR42_RS02570 at 578.586 kb on + strand, within RR42_RS02570 at 578.599 kb on + strand, within RR42_RS02570 at 578.600 kb on - strand, within RR42_RS02570 at 578.712 kb on - strand at 578.850 kb on + strand at 578.901 kb on + strand at 578.901 kb on + strand at 578.902 kb on - strand at 579.091 kb on - strand at 579.091 kb on - strand at 579.091 kb on - strand at 579.153 kb on + strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.154 kb on - strand at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.271 kb on - strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.307 kb on + strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.308 kb on - strand, within RR42_RS02575 at 579.343 kb on + strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575 at 579.344 kb on - strand, within RR42_RS02575
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 576,526 - RR42_RS02565 0.20 -2.0 576,526 - RR42_RS02565 0.20 -1.7 576,772 - RR42_RS02565 0.45 -1.9 576,772 - RR42_RS02565 0.45 -1.7 576,792 - RR42_RS02565 0.47 +0.9 576,813 + RR42_RS02565 0.49 +1.9 576,852 + RR42_RS02565 0.53 -1.1 576,852 + RR42_RS02565 0.53 +0.6 576,886 - RR42_RS02565 0.57 -2.1 576,930 + RR42_RS02565 0.61 -0.5 576,930 + RR42_RS02565 0.61 -1.0 576,930 + RR42_RS02565 0.61 -1.4 576,931 - RR42_RS02565 0.62 +0.4 576,931 - RR42_RS02565 0.62 -0.5 576,932 + RR42_RS02565 0.62 -0.1 576,932 + RR42_RS02565 0.62 -0.8 576,933 - RR42_RS02565 0.62 -1.5 577,012 - RR42_RS02565 0.70 +0.3 577,340 + -1.8 577,341 - +0.4 577,341 - -0.8 577,572 + -1.7 577,573 - -0.9 577,846 - RR42_RS02570 0.28 -0.7 577,846 - RR42_RS02570 0.28 -3.2 577,865 + RR42_RS02570 0.29 -0.4 577,923 + RR42_RS02570 0.34 -0.2 577,924 - RR42_RS02570 0.34 -0.4 577,924 - RR42_RS02570 0.34 -0.5 577,924 - RR42_RS02570 0.34 -1.7 577,924 - RR42_RS02570 0.34 +0.5 577,925 + RR42_RS02570 0.34 -1.0 577,925 + RR42_RS02570 0.34 -1.0 577,926 - RR42_RS02570 0.34 -0.7 578,022 + RR42_RS02570 0.41 -0.9 578,022 + RR42_RS02570 0.41 -1.7 578,023 - RR42_RS02570 0.41 -1.6 578,023 - RR42_RS02570 0.41 -0.8 578,023 - RR42_RS02570 0.41 -0.5 578,283 + RR42_RS02570 0.61 +0.3 578,283 + RR42_RS02570 0.61 +0.3 578,322 + RR42_RS02570 0.64 +0.1 578,322 + RR42_RS02570 0.64 -0.3 578,322 + RR42_RS02570 0.64 -0.6 578,323 - RR42_RS02570 0.64 -0.7 578,323 - RR42_RS02570 0.64 -0.3 578,323 - RR42_RS02570 0.64 -0.3 578,535 - RR42_RS02570 0.81 -1.2 578,586 + RR42_RS02570 0.84 -1.6 578,599 + RR42_RS02570 0.85 -1.2 578,600 - RR42_RS02570 0.85 -0.7 578,712 - -0.3 578,850 + +0.1 578,901 + +0.3 578,901 + +0.1 578,902 - +0.3 579,091 - -0.3 579,091 - +0.2 579,091 - +0.3 579,153 + +2.0 579,154 - +1.0 579,154 - -0.6 579,154 - -0.1 579,271 - RR42_RS02575 0.13 -1.5 579,271 - RR42_RS02575 0.13 +0.1 579,271 - RR42_RS02575 0.13 +0.5 579,307 + RR42_RS02575 0.17 -0.1 579,307 + RR42_RS02575 0.17 -0.4 579,308 - RR42_RS02575 0.17 -0.1 579,308 - RR42_RS02575 0.17 +0.7 579,343 + RR42_RS02575 0.21 +0.4 579,344 - RR42_RS02575 0.21 -0.4 579,344 - RR42_RS02575 0.21 -0.7
Or see this region's nucleotide sequence