Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02435 and RR42_RS02440 are separated by 14 nucleotides RR42_RS02440 and RR42_RS02445 are separated by 43 nucleotides RR42_RS02445 and RR42_RS02450 are separated by 65 nucleotides
RR42_RS02435: RR42_RS02435 - FmdB family transcriptional regulator, at 548,435 to 548,794
_RS02435
RR42_RS02440: RR42_RS02440 - membrane protein, at 548,809 to 549,507
_RS02440
RR42_RS02445: RR42_RS02445 - aspartyl-tRNA synthetase, at 549,551 to 551,356
_RS02445
RR42_RS02450: RR42_RS02450 - MFS transporter, at 551,422 to 552,729
_RS02450
Position (kb) 549
550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.093 kb on + strand, within RR42_RS02440 at 549.385 kb on + strand, within RR42_RS02440 at 551.503 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.522 kb on + strand at 551.523 kb on - strand at 551.642 kb on + strand, within RR42_RS02450 at 551.642 kb on + strand, within RR42_RS02450 at 551.694 kb on - strand, within RR42_RS02450 at 551.711 kb on - strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.737 kb on + strand, within RR42_RS02450 at 551.933 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.945 kb on + strand, within RR42_RS02450 at 551.946 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.973 kb on - strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.990 kb on + strand, within RR42_RS02450 at 551.991 kb on - strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.034 kb on + strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.035 kb on - strand, within RR42_RS02450 at 552.282 kb on + strand, within RR42_RS02450 at 552.283 kb on - strand, within RR42_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 549,093 + RR42_RS02440 0.41 +2.2 549,385 + RR42_RS02440 0.82 +2.1 551,503 + +0.0 551,522 + +0.0 551,522 + +0.1 551,522 + -0.4 551,522 + -0.2 551,522 + +0.1 551,523 - +0.8 551,642 + RR42_RS02450 0.17 -0.1 551,642 + RR42_RS02450 0.17 +0.6 551,694 - RR42_RS02450 0.21 -0.3 551,711 - RR42_RS02450 0.22 +0.5 551,737 + RR42_RS02450 0.24 +0.2 551,737 + RR42_RS02450 0.24 -0.1 551,933 + RR42_RS02450 0.39 -0.7 551,945 + RR42_RS02450 0.40 +0.0 551,945 + RR42_RS02450 0.40 -0.3 551,946 - RR42_RS02450 0.40 -0.1 551,973 - RR42_RS02450 0.42 -0.1 551,973 - RR42_RS02450 0.42 -2.3 551,973 - RR42_RS02450 0.42 +0.5 551,990 + RR42_RS02450 0.43 -0.0 551,990 + RR42_RS02450 0.43 -1.0 551,991 - RR42_RS02450 0.44 -0.4 552,034 + RR42_RS02450 0.47 +0.3 552,034 + RR42_RS02450 0.47 -0.1 552,035 - RR42_RS02450 0.47 -0.3 552,035 - RR42_RS02450 0.47 -0.0 552,035 - RR42_RS02450 0.47 +0.3 552,282 + RR42_RS02450 0.66 +0.3 552,283 - RR42_RS02450 0.66 -1.5
Or see this region's nucleotide sequence