Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01600 and RR42_RS01605 are separated by 111 nucleotides RR42_RS01605 and RR42_RS01610 are separated by 72 nucleotides RR42_RS01610 and RR42_RS01615 are separated by 461 nucleotides
RR42_RS01600: RR42_RS01600 - methylmalonyl-CoA mutase, at 362,224 to 365,532
_RS01600
RR42_RS01605: RR42_RS01605 - hydrolase, at 365,644 to 366,078
_RS01605
RR42_RS01610: RR42_RS01610 - 3-hydroxybutyryl-CoA dehydrogenase, at 366,151 to 367,005
_RS01610
RR42_RS01615: RR42_RS01615 - aerotaxis receptor Aer, at 367,467 to 369,011
_RS01615
Position (kb) 366
367
368 Strain fitness (log2 ratio) -1
0
1
2 at 365.209 kb on + strand at 365.213 kb on - strand at 365.213 kb on - strand at 365.259 kb on + strand at 365.259 kb on + strand at 365.260 kb on - strand at 365.505 kb on - strand at 365.526 kb on + strand at 365.527 kb on - strand at 365.572 kb on + strand at 365.653 kb on - strand at 365.674 kb on - strand at 365.674 kb on - strand at 365.717 kb on + strand, within RR42_RS01605 at 365.717 kb on + strand, within RR42_RS01605 at 365.718 kb on - strand, within RR42_RS01605 at 365.718 kb on - strand, within RR42_RS01605 at 365.720 kb on - strand, within RR42_RS01605 at 365.777 kb on + strand, within RR42_RS01605 at 365.778 kb on - strand, within RR42_RS01605 at 366.237 kb on - strand, within RR42_RS01610 at 366.237 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.758 kb on + strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.989 kb on - strand at 366.989 kb on - strand at 366.994 kb on + strand at 366.994 kb on + strand at 366.995 kb on - strand at 367.158 kb on + strand at 367.158 kb on + strand at 367.181 kb on - strand at 367.235 kb on - strand at 367.235 kb on - strand at 367.238 kb on - strand at 367.320 kb on + strand at 367.321 kb on - strand at 367.392 kb on - strand at 367.466 kb on + strand at 367.501 kb on - strand at 367.629 kb on - strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.798 kb on - strand, within RR42_RS01615 at 367.854 kb on + strand, within RR42_RS01615 at 367.874 kb on + strand, within RR42_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 365,209 + -0.0 365,213 - +0.5 365,213 - +0.9 365,259 + -1.4 365,259 + -0.5 365,260 - -0.9 365,505 - +0.6 365,526 + -1.1 365,527 - +0.1 365,572 + -1.6 365,653 - +0.2 365,674 - -1.6 365,674 - +0.4 365,717 + RR42_RS01605 0.17 +0.1 365,717 + RR42_RS01605 0.17 +2.0 365,718 - RR42_RS01605 0.17 +1.0 365,718 - RR42_RS01605 0.17 -0.2 365,720 - RR42_RS01605 0.17 +0.5 365,777 + RR42_RS01605 0.31 +0.4 365,778 - RR42_RS01605 0.31 +1.0 366,237 - RR42_RS01610 0.10 +2.2 366,237 - RR42_RS01610 0.10 -0.0 366,380 - RR42_RS01610 0.27 -0.2 366,380 - RR42_RS01610 0.27 +1.0 366,380 - RR42_RS01610 0.27 +1.2 366,380 - RR42_RS01610 0.27 +0.5 366,758 + RR42_RS01610 0.71 +0.6 366,893 - RR42_RS01610 0.87 +0.4 366,893 - RR42_RS01610 0.87 +1.2 366,989 - +0.0 366,989 - +0.4 366,994 + -0.6 366,994 + +0.8 366,995 - +0.7 367,158 + -0.8 367,158 + -0.0 367,181 - -0.6 367,235 - +0.4 367,235 - -1.7 367,238 - +0.6 367,320 + +0.3 367,321 - +0.1 367,392 - -1.7 367,466 + -0.6 367,501 - +1.7 367,629 - RR42_RS01615 0.10 -0.0 367,797 + RR42_RS01615 0.21 +0.3 367,797 + RR42_RS01615 0.21 -0.3 367,797 + RR42_RS01615 0.21 -0.3 367,798 - RR42_RS01615 0.21 -0.7 367,854 + RR42_RS01615 0.25 +0.5 367,874 + RR42_RS01615 0.26 -0.1
Or see this region's nucleotide sequence