Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01250 and RR42_RS01255 are separated by 100 nucleotides RR42_RS01255 and RR42_RS01260 overlap by 4 nucleotides
RR42_RS01250: RR42_RS01250 - diaminopimelate epimerase, at 282,646 to 283,512
_RS01250
RR42_RS01255: RR42_RS01255 - lauroyl acyltransferase, at 283,613 to 284,506
_RS01255
RR42_RS01260: RR42_RS01260 - lauroyl acyltransferase, at 284,503 to 285,441
_RS01260
Position (kb) 283
284
285 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 282.642 kb on - strand at 283.523 kb on + strand at 283.523 kb on + strand at 283.617 kb on + strand at 283.617 kb on + strand at 283.669 kb on - strand at 283.672 kb on - strand at 283.785 kb on + strand, within RR42_RS01255 at 283.785 kb on + strand, within RR42_RS01255 at 283.795 kb on - strand, within RR42_RS01255 at 283.795 kb on - strand, within RR42_RS01255 at 283.816 kb on - strand, within RR42_RS01255 at 283.902 kb on + strand, within RR42_RS01255 at 284.075 kb on - strand, within RR42_RS01255 at 284.076 kb on + strand, within RR42_RS01255 at 284.076 kb on + strand, within RR42_RS01255 at 284.077 kb on - strand, within RR42_RS01255 at 284.400 kb on + strand, within RR42_RS01255 at 284.400 kb on + strand, within RR42_RS01255 at 284.652 kb on - strand, within RR42_RS01260 at 284.752 kb on - strand, within RR42_RS01260 at 284.752 kb on - strand, within RR42_RS01260 at 285.057 kb on - strand, within RR42_RS01260 at 285.198 kb on - strand, within RR42_RS01260 at 285.198 kb on - strand, within RR42_RS01260 at 285.198 kb on - strand, within RR42_RS01260 at 285.234 kb on - strand, within RR42_RS01260 at 285.481 kb on - strand at 285.481 kb on - strand at 285.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 282,642 - -2.4 283,523 + +0.5 283,523 + -0.1 283,617 + +0.3 283,617 + -0.7 283,669 - -2.7 283,672 - -3.2 283,785 + RR42_RS01255 0.19 -2.5 283,785 + RR42_RS01255 0.19 -0.8 283,795 - RR42_RS01255 0.20 -2.4 283,795 - RR42_RS01255 0.20 -1.4 283,816 - RR42_RS01255 0.23 -2.7 283,902 + RR42_RS01255 0.32 -2.1 284,075 - RR42_RS01255 0.52 -5.5 284,076 + RR42_RS01255 0.52 -1.9 284,076 + RR42_RS01255 0.52 -2.3 284,077 - RR42_RS01255 0.52 -3.4 284,400 + RR42_RS01255 0.88 -1.4 284,400 + RR42_RS01255 0.88 -4.5 284,652 - RR42_RS01260 0.16 -3.0 284,752 - RR42_RS01260 0.27 -2.2 284,752 - RR42_RS01260 0.27 -3.2 285,057 - RR42_RS01260 0.59 -1.5 285,198 - RR42_RS01260 0.74 -3.7 285,198 - RR42_RS01260 0.74 -4.0 285,198 - RR42_RS01260 0.74 -2.4 285,234 - RR42_RS01260 0.78 -3.3 285,481 - +0.8 285,481 - -1.0 285,481 - -0.0
Or see this region's nucleotide sequence