Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01185

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01180 and RR42_RS01185 are separated by 157 nucleotidesRR42_RS01185 and RR42_RS01190 are separated by 246 nucleotides RR42_RS01180: RR42_RS01180 - acyl-CoA thioesterase, at 270,284 to 271,114 _RS01180 RR42_RS01185: RR42_RS01185 - muropeptide transporter, at 271,272 to 272,528 _RS01185 RR42_RS01190: RR42_RS01190 - peptidase M48, at 272,775 to 273,722 _RS01190 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 270.387 kb on - strand, within RR42_RS01180at 270.737 kb on + strand, within RR42_RS01180at 270.737 kb on + strand, within RR42_RS01180at 270.737 kb on + strand, within RR42_RS01180at 270.944 kb on + strand, within RR42_RS01180at 270.944 kb on + strand, within RR42_RS01180at 270.944 kb on + strand, within RR42_RS01180at 270.944 kb on + strand, within RR42_RS01180at 270.945 kb on - strand, within RR42_RS01180at 271.103 kb on + strandat 271.103 kb on + strandat 271.103 kb on + strandat 271.103 kb on + strandat 271.104 kb on - strandat 271.104 kb on - strandat 271.104 kb on - strandat 271.104 kb on - strandat 271.104 kb on - strandat 271.112 kb on + strandat 271.112 kb on + strandat 271.112 kb on + strandat 271.113 kb on - strandat 271.113 kb on - strandat 271.113 kb on - strandat 271.171 kb on - strandat 271.171 kb on - strandat 271.233 kb on - strandat 271.273 kb on + strandat 271.300 kb on + strandat 271.330 kb on - strandat 271.339 kb on - strandat 271.372 kb on + strandat 271.373 kb on - strandat 271.426 kb on + strand, within RR42_RS01185at 271.427 kb on - strand, within RR42_RS01185at 271.427 kb on - strand, within RR42_RS01185at 271.610 kb on - strand, within RR42_RS01185at 271.660 kb on + strand, within RR42_RS01185at 271.660 kb on + strand, within RR42_RS01185at 271.826 kb on - strand, within RR42_RS01185at 271.996 kb on + strand, within RR42_RS01185at 271.997 kb on - strand, within RR42_RS01185at 271.997 kb on - strand, within RR42_RS01185at 272.134 kb on + strand, within RR42_RS01185at 272.135 kb on - strand, within RR42_RS01185at 272.166 kb on + strand, within RR42_RS01185at 272.166 kb on + strand, within RR42_RS01185at 272.166 kb on + strand, within RR42_RS01185at 272.167 kb on - strand, within RR42_RS01185at 272.309 kb on + strand, within RR42_RS01185at 272.310 kb on - strand, within RR42_RS01185at 272.312 kb on - strand, within RR42_RS01185at 272.312 kb on - strand, within RR42_RS01185at 272.348 kb on + strand, within RR42_RS01185at 272.348 kb on + strand, within RR42_RS01185at 272.348 kb on + strand, within RR42_RS01185at 272.349 kb on - strand, within RR42_RS01185at 272.349 kb on - strand, within RR42_RS01185at 272.349 kb on - strand, within RR42_RS01185at 272.349 kb on - strand, within RR42_RS01185at 272.349 kb on - strand, within RR42_RS01185at 272.350 kb on + strand, within RR42_RS01185at 272.350 kb on + strand, within RR42_RS01185at 272.350 kb on + strand, within RR42_RS01185at 272.350 kb on + strand, within RR42_RS01185at 272.351 kb on - strand, within RR42_RS01185at 272.351 kb on - strand, within RR42_RS01185at 272.351 kb on - strand, within RR42_RS01185at 272.513 kb on - strandat 272.604 kb on - strandat 272.604 kb on - strandat 272.607 kb on - strandat 272.607 kb on - strandat 272.607 kb on - strandat 272.615 kb on - strandat 272.615 kb on - strandat 272.687 kb on - strandat 272.958 kb on + strand, within RR42_RS01190at 273.168 kb on + strand, within RR42_RS01190at 273.168 kb on + strand, within RR42_RS01190at 273.168 kb on + strand, within RR42_RS01190at 273.168 kb on + strand, within RR42_RS01190at 273.169 kb on - strand, within RR42_RS01190at 273.344 kb on + strand, within RR42_RS01190at 273.345 kb on - strand, within RR42_RS01190at 273.345 kb on - strand, within RR42_RS01190at 273.345 kb on - strandat 273.345 kb on - strand, within RR42_RS01190at 273.447 kb on + strand, within RR42_RS01190

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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270,387 - RR42_RS01180 0.12 +0.6
270,737 + RR42_RS01180 0.55 -0.2
270,737 + RR42_RS01180 0.55 +0.2
270,737 + RR42_RS01180 0.55 +2.0
270,944 + RR42_RS01180 0.79 +1.7
270,944 + RR42_RS01180 0.79 +0.5
270,944 + RR42_RS01180 0.79 -0.6
270,944 + RR42_RS01180 0.79 -0.4
270,945 - RR42_RS01180 0.80 -2.1
271,103 + +0.5
271,103 + +0.3
271,103 + +0.6
271,103 + +1.2
271,104 - -0.0
271,104 - -0.8
271,104 - +0.2
271,104 - +0.8
271,104 - -0.4
271,112 + -1.6
271,112 + -0.1
271,112 + +0.2
271,113 - -0.5
271,113 - -0.1
271,113 - +0.1
271,171 - -0.4
271,171 - -0.1
271,233 - -0.7
271,273 + +0.4
271,300 + +0.6
271,330 - -0.4
271,339 - -2.4
271,372 + -2.0
271,373 - -1.6
271,426 + RR42_RS01185 0.12 -1.8
271,427 - RR42_RS01185 0.12 -1.2
271,427 - RR42_RS01185 0.12 -1.0
271,610 - RR42_RS01185 0.27 -2.0
271,660 + RR42_RS01185 0.31 -2.2
271,660 + RR42_RS01185 0.31 -1.8
271,826 - RR42_RS01185 0.44 -2.4
271,996 + RR42_RS01185 0.58 -2.3
271,997 - RR42_RS01185 0.58 -1.0
271,997 - RR42_RS01185 0.58 -2.8
272,134 + RR42_RS01185 0.69 -2.6
272,135 - RR42_RS01185 0.69 -1.4
272,166 + RR42_RS01185 0.71 -2.0
272,166 + RR42_RS01185 0.71 -1.9
272,166 + RR42_RS01185 0.71 -3.2
272,167 - RR42_RS01185 0.71 -1.1
272,309 + RR42_RS01185 0.82 +0.6
272,310 - RR42_RS01185 0.83 -2.0
272,312 - RR42_RS01185 0.83 -2.1
272,312 - RR42_RS01185 0.83 -2.6
272,348 + RR42_RS01185 0.86 -2.0
272,348 + RR42_RS01185 0.86 -2.9
272,348 + RR42_RS01185 0.86 -0.5
272,349 - RR42_RS01185 0.86 -1.5
272,349 - RR42_RS01185 0.86 -0.9
272,349 - RR42_RS01185 0.86 -2.9
272,349 - RR42_RS01185 0.86 -2.5
272,349 - RR42_RS01185 0.86 -2.8
272,350 + RR42_RS01185 0.86 +0.2
272,350 + RR42_RS01185 0.86 -0.9
272,350 + RR42_RS01185 0.86 -2.0
272,350 + RR42_RS01185 0.86 -1.5
272,351 - RR42_RS01185 0.86 -1.3
272,351 - RR42_RS01185 0.86 -2.5
272,351 - RR42_RS01185 0.86 -1.5
272,513 - -0.4
272,604 - -0.2
272,604 - -0.5
272,607 - +2.2
272,607 - -0.4
272,607 - -0.1
272,615 - -0.2
272,615 - +1.2
272,687 - -0.3
272,958 + RR42_RS01190 0.19 +0.2
273,168 + RR42_RS01190 0.41 +0.6
273,168 + RR42_RS01190 0.41 +0.2
273,168 + RR42_RS01190 0.41 -0.1
273,168 + RR42_RS01190 0.41 +1.6
273,169 - RR42_RS01190 0.42 -0.4
273,344 + RR42_RS01190 0.60 +0.4
273,345 - RR42_RS01190 0.60 -0.3
273,345 - RR42_RS01190 0.60 +0.7
273,345 - +0.2
273,345 - RR42_RS01190 0.60 +1.4
273,447 + RR42_RS01190 0.71 +0.6

Or see this region's nucleotide sequence