Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01090 and RR42_RS01095 are separated by 214 nucleotides RR42_RS01095 and RR42_RS01100 are separated by 35 nucleotides
RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676
_RS01090
RR42_RS01095: RR42_RS01095 - membrane protein, at 255,891 to 256,370
_RS01095
RR42_RS01100: RR42_RS01100 - LysR family transcriptional regulator, at 256,406 to 257,341
_RS01100
Position (kb) 255
256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 255.150 kb on + strand, within RR42_RS01090 at 255.150 kb on + strand, within RR42_RS01090 at 255.151 kb on - strand, within RR42_RS01090 at 255.151 kb on - strand, within RR42_RS01090 at 255.192 kb on + strand, within RR42_RS01090 at 255.192 kb on + strand, within RR42_RS01090 at 255.193 kb on - strand, within RR42_RS01090 at 255.193 kb on - strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.214 kb on - strand, within RR42_RS01090 at 255.229 kb on - strand, within RR42_RS01090 at 255.294 kb on + strand, within RR42_RS01090 at 255.295 kb on - strand, within RR42_RS01090 at 255.670 kb on + strand at 255.671 kb on - strand at 255.688 kb on - strand at 255.688 kb on - strand at 255.844 kb on - strand at 255.844 kb on - strand at 255.856 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 256.074 kb on - strand, within RR42_RS01095 at 256.394 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.408 kb on - strand at 256.480 kb on + strand at 256.480 kb on + strand at 256.481 kb on - strand at 256.830 kb on + strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 257.025 kb on + strand, within RR42_RS01100 at 257.026 kb on - strand, within RR42_RS01100 at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.350 kb on + strand at 257.350 kb on + strand at 257.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 255,150 + RR42_RS01090 0.62 +1.2 255,150 + RR42_RS01090 0.62 +1.2 255,151 - RR42_RS01090 0.63 +0.8 255,151 - RR42_RS01090 0.63 +1.2 255,192 + RR42_RS01090 0.65 +1.0 255,192 + RR42_RS01090 0.65 +0.7 255,193 - RR42_RS01090 0.66 +1.0 255,193 - RR42_RS01090 0.66 -0.5 255,213 + RR42_RS01090 0.67 -0.9 255,213 + RR42_RS01090 0.67 -0.1 255,213 + RR42_RS01090 0.67 +0.2 255,213 + RR42_RS01090 0.67 +0.5 255,214 - RR42_RS01090 0.67 +0.0 255,229 - RR42_RS01090 0.68 -0.2 255,294 + RR42_RS01090 0.73 -1.2 255,295 - RR42_RS01090 0.73 -2.6 255,670 + +0.2 255,671 - -2.0 255,688 - -1.2 255,688 - +0.3 255,844 - -2.9 255,844 - +0.4 255,856 - -1.4 255,884 - -1.2 255,884 - -1.9 255,884 - -3.0 255,884 - -1.4 256,074 - RR42_RS01095 0.38 -2.3 256,394 + +0.5 256,407 + -0.2 256,407 + -0.4 256,407 + -0.3 256,408 - -0.2 256,480 + -1.3 256,480 + -1.4 256,481 - -0.4 256,830 + RR42_RS01100 0.45 -0.4 256,831 - RR42_RS01100 0.45 +0.2 256,831 - RR42_RS01100 0.45 -0.1 257,025 + RR42_RS01100 0.66 -0.8 257,026 - RR42_RS01100 0.66 -2.2 257,273 - -0.8 257,273 - +1.5 257,273 - -0.6 257,273 - -0.1 257,350 + -1.1 257,350 + -0.2 257,360 - -0.5
Or see this region's nucleotide sequence