Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00455

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
116,346	+		RR42_RS00445	0.68	+0.4
116,394	+		RR42_RS00445	0.72	-0.1
116,394	+		RR42_RS00445	0.72	+0.6
116,394	+		RR42_RS00445	0.72	+0.2
116,394	+		RR42_RS00445	0.72	+0.2
116,394	+		RR42_RS00445	0.72	-0.1
116,394	+		RR42_RS00445	0.72	+0.3
116,394	+		RR42_RS00445	0.72	-1.0
116,394	+		RR42_RS00445	0.72	+0.6
116,395	-		RR42_RS00445	0.72	-0.8
116,395	-		RR42_RS00445	0.72	+0.4
116,395	-		RR42_RS00445	0.72	-0.2
116,395	-		RR42_RS00445	0.72	+0.1
116,395	-		RR42_RS00445	0.72	+0.4
116,395	-		RR42_RS00445	0.72	+0.2
116,395	-		RR42_RS00445	0.72	+1.7
116,395	-		RR42_RS00445	0.72	+1.0
116,451	+		RR42_RS00445	0.77	+0.4
116,451	+		RR42_RS00445	0.77	+2.5
116,611	+				+0.4
116,616	+				+1.6
116,616	+				+1.2
116,616	+				+0.4
116,617	-				+0.2
116,643	+				+0.6
116,665	+				+0.3
116,666	-				+0.5
116,666	-				-0.1
116,712	+				+0.6
116,712	+				+0.2
116,713	-				-0.6
116,756	-				+2.8
116,767	-				-0.2
116,810	+				-1.6
116,810	+				+0.6
116,810	+				-0.1
116,811	-				-1.0
116,811	-				+1.9
116,811	-				+0.2
116,811	-				+0.4
116,833	+				+0.1
116,834	-				-1.4
116,912	+				-0.2
116,921	-				+0.7
116,938	+				-0.2
117,322	-				-1.5
117,322	-				-1.6
117,363	+				-0.6
117,420	+		RR42_RS00455	0.12	-0.1
117,588	+		RR42_RS00455	0.33	-1.1
117,588	+		RR42_RS00455	0.33	+0.2
117,588	+		RR42_RS00455	0.33	-3.0
117,588	+		RR42_RS00455	0.33	-1.1
117,589	-		RR42_RS00455	0.33	-1.1
117,735	+		RR42_RS00455	0.51	-1.4
117,735	+		RR42_RS00455	0.51	-1.0
117,735	+		RR42_RS00455	0.51	-0.6
117,735	+		RR42_RS00455	0.51	-0.5
117,736	-		RR42_RS00455	0.51	-1.9
117,736	-		RR42_RS00455	0.51	-0.3
117,736	-		RR42_RS00455	0.51	-4.2
117,789	+		RR42_RS00455	0.57	-0.6
117,789	+		RR42_RS00455	0.57	-0.3
117,790	-		RR42_RS00455	0.58	-0.2
117,945	-		RR42_RS00455	0.77	+0.4
117,945	-		RR42_RS00455	0.77	-1.0
117,963	+		RR42_RS00455	0.79	-0.8
118,094	+				-2.1
118,199	+				-2.9
118,200	-				+1.2
118,200	-				-1.9
118,200	-				-1.3
118,301	+		RR42_RS00460	0.13	-1.0
118,406	+		RR42_RS00460	0.25	-1.9
118,407	-		RR42_RS00460	0.26	-1.1
118,407	-		RR42_RS00460	0.26	-2.9
118,410	+		RR42_RS00460	0.26	-0.4
118,410	+		RR42_RS00460	0.26	-0.7
118,410	+		RR42_RS00460	0.26	-0.8
118,411	-		RR42_RS00460	0.26	-1.7
118,411	-		RR42_RS00460	0.26	-1.0
118,411	-		RR42_RS00460	0.26	+0.2
118,411	-		RR42_RS00460	0.26	+0.5
118,411	-		RR42_RS00460	0.26	-1.5
118,416	+		RR42_RS00460	0.27	-1.0
118,445	+		RR42_RS00460	0.30	-3.1
118,484	+		RR42_RS00460	0.35	-1.6
118,485	-		RR42_RS00460	0.35	-0.7
119,013	+				-1.5
119,013	+				-0.9
119,013	+				+0.2
119,013	+				-0.9
119,014	-				+0.4
119,042	+				-1.1
119,043	-				-2.3
119,074	-				-1.5
119,126	+				+1.4
119,126	+				+0.0
119,127	-				+0.4