Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00355 and RR42_RS00360 are separated by 90 nucleotides RR42_RS00360 and RR42_RS00365 are separated by 247 nucleotides
RR42_RS00355: RR42_RS00355 - hypothetical protein, at 96,779 to 97,741
_RS00355
RR42_RS00360: RR42_RS00360 - Asp/Glu/hydantoin racemase, at 97,832 to 98,569
_RS00360
RR42_RS00365: RR42_RS00365 - dihydropyrimidinase, at 98,817 to 100,232
_RS00365
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 97.019 kb on + strand, within RR42_RS00355 at 97.020 kb on - strand, within RR42_RS00355 at 97.101 kb on - strand, within RR42_RS00355 at 97.115 kb on + strand, within RR42_RS00355 at 97.191 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.377 kb on - strand, within RR42_RS00355 at 97.465 kb on + strand, within RR42_RS00355 at 97.611 kb on - strand, within RR42_RS00355 at 97.834 kb on - strand at 97.834 kb on - strand at 98.440 kb on + strand, within RR42_RS00360 at 98.443 kb on - strand, within RR42_RS00360 at 98.543 kb on - strand at 98.551 kb on + strand at 98.551 kb on + strand at 98.551 kb on + strand at 98.552 kb on - strand at 98.563 kb on + strand at 98.647 kb on - strand at 98.657 kb on - strand at 98.702 kb on - strand at 98.767 kb on + strand at 98.788 kb on - strand at 98.788 kb on - strand at 98.878 kb on + strand at 98.879 kb on - strand at 98.879 kb on - strand at 98.879 kb on - strand at 98.936 kb on + strand at 98.953 kb on + strand at 98.954 kb on - strand at 98.954 kb on - strand at 98.963 kb on - strand, within RR42_RS00365 at 98.988 kb on - strand, within RR42_RS00365 at 98.988 kb on - strand, within RR42_RS00365 at 99.079 kb on + strand, within RR42_RS00365 at 99.253 kb on + strand, within RR42_RS00365 at 99.377 kb on - strand, within RR42_RS00365 at 99.377 kb on - strand, within RR42_RS00365 at 99.402 kb on - strand, within RR42_RS00365 at 99.418 kb on + strand, within RR42_RS00365 at 99.425 kb on - strand, within RR42_RS00365
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 97,019 + RR42_RS00355 0.25 -0.7 97,020 - RR42_RS00355 0.25 -1.8 97,101 - RR42_RS00355 0.33 +0.4 97,115 + RR42_RS00355 0.35 -0.3 97,191 + RR42_RS00355 0.43 -2.0 97,340 + RR42_RS00355 0.58 +0.1 97,340 + RR42_RS00355 0.58 -1.2 97,340 + RR42_RS00355 0.58 -1.2 97,341 - RR42_RS00355 0.58 -0.5 97,341 - RR42_RS00355 0.58 +0.8 97,341 - RR42_RS00355 0.58 -0.0 97,377 - RR42_RS00355 0.62 +0.0 97,465 + RR42_RS00355 0.71 +0.7 97,611 - RR42_RS00355 0.86 -1.2 97,834 - +1.2 97,834 - +1.9 98,440 + RR42_RS00360 0.82 -0.5 98,443 - RR42_RS00360 0.83 -1.5 98,543 - +0.1 98,551 + -0.5 98,551 + +2.0 98,551 + +0.6 98,552 - +0.7 98,563 + -0.8 98,647 - +0.7 98,657 - -0.1 98,702 - -0.8 98,767 + +1.2 98,788 - -0.8 98,788 - -0.8 98,878 + -2.3 98,879 - +0.5 98,879 - -0.7 98,879 - -0.6 98,936 + -0.6 98,953 + +0.2 98,954 - -2.0 98,954 - -0.4 98,963 - RR42_RS00365 0.10 -0.8 98,988 - RR42_RS00365 0.12 +0.0 98,988 - RR42_RS00365 0.12 +0.4 99,079 + RR42_RS00365 0.19 -0.1 99,253 + RR42_RS00365 0.31 +0.1 99,377 - RR42_RS00365 0.40 -0.6 99,377 - RR42_RS00365 0.40 -0.1 99,402 - RR42_RS00365 0.41 -0.2 99,418 + RR42_RS00365 0.42 -1.3 99,425 - RR42_RS00365 0.43 +0.3
Or see this region's nucleotide sequence