Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00345 and RR42_RS00350 are separated by 18 nucleotides RR42_RS00350 and RR42_RS00355 are separated by 141 nucleotides
RR42_RS00345: RR42_RS00345 - LysR family transcriptional regulator, at 94,805 to 95,716
_RS00345
RR42_RS00350: RR42_RS00350 - LysR family transcriptional regulator, at 95,735 to 96,637
_RS00350
RR42_RS00355: RR42_RS00355 - hypothetical protein, at 96,779 to 97,741
_RS00355
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1 at 94.735 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.818 kb on - strand at 94.985 kb on + strand, within RR42_RS00345 at 94.986 kb on - strand, within RR42_RS00345 at 95.714 kb on + strand at 95.714 kb on + strand at 95.790 kb on + strand at 95.908 kb on + strand, within RR42_RS00350 at 95.908 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.911 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.666 kb on + strand at 96.667 kb on - strand at 96.814 kb on - strand at 97.019 kb on + strand, within RR42_RS00355 at 97.020 kb on - strand, within RR42_RS00355 at 97.101 kb on - strand, within RR42_RS00355 at 97.115 kb on + strand, within RR42_RS00355 at 97.191 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.340 kb on + strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.341 kb on - strand, within RR42_RS00355 at 97.377 kb on - strand, within RR42_RS00355 at 97.465 kb on + strand, within RR42_RS00355 at 97.611 kb on - strand, within RR42_RS00355
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 94,735 - +0.0 94,812 + -0.4 94,813 - +0.3 94,818 - +0.4 94,985 + RR42_RS00345 0.20 +0.0 94,986 - RR42_RS00345 0.20 +0.7 95,714 + -0.3 95,714 + +0.8 95,790 + -1.4 95,908 + RR42_RS00350 0.19 +0.1 95,908 + RR42_RS00350 0.19 +0.3 95,910 + RR42_RS00350 0.19 +0.2 95,910 + RR42_RS00350 0.19 +0.6 95,910 + RR42_RS00350 0.19 -0.9 95,910 + RR42_RS00350 0.19 +0.2 95,910 + RR42_RS00350 0.19 -0.0 95,911 - RR42_RS00350 0.19 +1.2 96,118 - RR42_RS00350 0.42 -0.6 96,118 - RR42_RS00350 0.42 -0.5 96,136 + RR42_RS00350 0.44 -0.3 96,136 + RR42_RS00350 0.44 -0.3 96,136 + RR42_RS00350 0.44 +0.7 96,137 - RR42_RS00350 0.45 +0.1 96,137 - RR42_RS00350 0.45 +1.2 96,140 + RR42_RS00350 0.45 +0.7 96,140 + RR42_RS00350 0.45 -0.0 96,666 + +0.3 96,667 - -0.1 96,814 - +0.2 97,019 + RR42_RS00355 0.25 -0.7 97,020 - RR42_RS00355 0.25 -1.8 97,101 - RR42_RS00355 0.33 +0.4 97,115 + RR42_RS00355 0.35 -0.3 97,191 + RR42_RS00355 0.43 -2.0 97,340 + RR42_RS00355 0.58 +0.1 97,340 + RR42_RS00355 0.58 -1.2 97,340 + RR42_RS00355 0.58 -1.2 97,341 - RR42_RS00355 0.58 -0.5 97,341 - RR42_RS00355 0.58 +0.8 97,341 - RR42_RS00355 0.58 -0.0 97,377 - RR42_RS00355 0.62 +0.0 97,465 + RR42_RS00355 0.71 +0.7 97,611 - RR42_RS00355 0.86 -1.2
Or see this region's nucleotide sequence