Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00335 and RR42_RS00340 are separated by 21 nucleotides RR42_RS00340 and RR42_RS00345 are separated by 152 nucleotides RR42_RS00345 and RR42_RS00350 are separated by 18 nucleotides
RR42_RS00335: RR42_RS00335 - MBL fold metallo-hydrolase, at 93,213 to 94,004
_RS00335
RR42_RS00340: RR42_RS00340 - glutathione S-transferase, at 94,026 to 94,652
_RS00340
RR42_RS00345: RR42_RS00345 - LysR family transcriptional regulator, at 94,805 to 95,716
_RS00345
RR42_RS00350: RR42_RS00350 - LysR family transcriptional regulator, at 95,735 to 96,637
_RS00350
Position (kb) 94
95
96 Strain fitness (log2 ratio) -1
0
1
2 at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.969 kb on + strand at 93.970 kb on - strand at 93.970 kb on - strand at 93.970 kb on - strand at 94.114 kb on + strand, within RR42_RS00340 at 94.115 kb on - strand, within RR42_RS00340 at 94.168 kb on + strand, within RR42_RS00340 at 94.168 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.204 kb on + strand, within RR42_RS00340 at 94.205 kb on - strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.426 kb on + strand, within RR42_RS00340 at 94.427 kb on - strand, within RR42_RS00340 at 94.427 kb on - strand, within RR42_RS00340 at 94.504 kb on - strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.510 kb on + strand, within RR42_RS00340 at 94.511 kb on - strand, within RR42_RS00340 at 94.511 kb on - strand, within RR42_RS00340 at 94.639 kb on + strand at 94.639 kb on + strand at 94.639 kb on + strand at 94.640 kb on - strand at 94.642 kb on + strand at 94.643 kb on - strand at 94.735 kb on - strand at 94.812 kb on + strand at 94.813 kb on - strand at 94.818 kb on - strand at 94.985 kb on + strand, within RR42_RS00345 at 94.986 kb on - strand, within RR42_RS00345 at 95.714 kb on + strand at 95.714 kb on + strand at 95.790 kb on + strand at 95.908 kb on + strand, within RR42_RS00350 at 95.908 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.910 kb on + strand, within RR42_RS00350 at 95.911 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.118 kb on - strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.136 kb on + strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.137 kb on - strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.140 kb on + strand, within RR42_RS00350 at 96.666 kb on + strand at 96.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 93,969 + +1.2 93,969 + -0.6 93,969 + +0.9 93,969 + +0.5 93,969 + -0.0 93,969 + +1.0 93,969 + +0.7 93,970 - +0.3 93,970 - +0.3 93,970 - -0.3 94,114 + RR42_RS00340 0.14 -0.3 94,115 - RR42_RS00340 0.14 +1.9 94,168 + RR42_RS00340 0.23 -0.2 94,168 + RR42_RS00340 0.23 +0.1 94,204 + RR42_RS00340 0.28 -1.3 94,204 + RR42_RS00340 0.28 -0.3 94,204 + RR42_RS00340 0.28 +1.0 94,205 - RR42_RS00340 0.29 -1.5 94,426 + RR42_RS00340 0.64 +0.2 94,426 + RR42_RS00340 0.64 +0.9 94,426 + RR42_RS00340 0.64 -1.3 94,426 + RR42_RS00340 0.64 +0.4 94,426 + RR42_RS00340 0.64 +0.1 94,427 - RR42_RS00340 0.64 +1.2 94,427 - RR42_RS00340 0.64 -0.6 94,504 - RR42_RS00340 0.76 +1.7 94,510 + RR42_RS00340 0.77 +1.7 94,510 + RR42_RS00340 0.77 -1.1 94,510 + RR42_RS00340 0.77 -0.4 94,511 - RR42_RS00340 0.77 +0.3 94,511 - RR42_RS00340 0.77 -0.4 94,639 + -0.8 94,639 + -0.1 94,639 + +0.2 94,640 - +0.4 94,642 + +0.6 94,643 - +1.1 94,735 - +0.0 94,812 + -0.4 94,813 - +0.3 94,818 - +0.4 94,985 + RR42_RS00345 0.20 +0.0 94,986 - RR42_RS00345 0.20 +0.7 95,714 + -0.3 95,714 + +0.8 95,790 + -1.4 95,908 + RR42_RS00350 0.19 +0.1 95,908 + RR42_RS00350 0.19 +0.3 95,910 + RR42_RS00350 0.19 +0.2 95,910 + RR42_RS00350 0.19 +0.6 95,910 + RR42_RS00350 0.19 -0.9 95,910 + RR42_RS00350 0.19 +0.2 95,910 + RR42_RS00350 0.19 -0.0 95,911 - RR42_RS00350 0.19 +1.2 96,118 - RR42_RS00350 0.42 -0.6 96,118 - RR42_RS00350 0.42 -0.5 96,136 + RR42_RS00350 0.44 -0.3 96,136 + RR42_RS00350 0.44 -0.3 96,136 + RR42_RS00350 0.44 +0.7 96,137 - RR42_RS00350 0.45 +0.1 96,137 - RR42_RS00350 0.45 +1.2 96,140 + RR42_RS00350 0.45 +0.7 96,140 + RR42_RS00350 0.45 -0.0 96,666 + +0.3 96,667 - -0.1
Or see this region's nucleotide sequence