Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00030

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
9,783	-		RR42_RS00025	0.65	-0.2
9,863	+		RR42_RS00025	0.68	-2.0
9,863	+		RR42_RS00025	0.68	+1.2
9,953	-		RR42_RS00025	0.71	-0.2
9,953	-		RR42_RS00025	0.71	-0.0
9,990	-		RR42_RS00025	0.73	+0.5
10,010	+		RR42_RS00025	0.73	-1.6
10,010	+		RR42_RS00025	0.73	-0.0
10,011	-		RR42_RS00025	0.73	-1.1
10,086	+		RR42_RS00025	0.76	+0.4
10,130	+		RR42_RS00025	0.78	-0.5
10,159	-		RR42_RS00025	0.79	-0.3
10,162	+		RR42_RS00025	0.79	-1.3
10,162	+		RR42_RS00025	0.79	-0.5
10,162	+		RR42_RS00025	0.79	+0.0
10,162	+		RR42_RS00025	0.79	+0.5
10,162	+		RR42_RS00025	0.79	+0.3
10,163	-		RR42_RS00025	0.79	-0.5
10,163	-		RR42_RS00025	0.79	-0.3
10,163	-		RR42_RS00025	0.79	-0.1
10,251	+		RR42_RS00025	0.82	+0.7
10,357	-		RR42_RS00025	0.86	+1.2
10,388	+		RR42_RS00025	0.87	+1.2
10,388	+		RR42_RS00025	0.87	+0.8
10,389	-		RR42_RS00025	0.87	-2.8
10,396	+		RR42_RS00025	0.87	+0.2
10,397	-		RR42_RS00025	0.87	-0.6
10,397	-		RR42_RS00025	0.87	-0.0
10,398	+		RR42_RS00025	0.88	-0.8
10,399	-		RR42_RS00025	0.88	+0.0
10,399	-		RR42_RS00025	0.88	-0.9
10,468	-				+0.2
10,504	-				+1.0
10,615	-				-0.3
10,615	-				-0.9
10,615	-				+2.7
10,615	-				+1.4
10,643	+				-0.3
10,644	-				+0.0
10,664	+				+1.0
10,664	+				-0.5
10,706	+				-0.8
10,707	-				-0.2
10,707	-				+1.4
10,750	-				+0.9
10,805	+				-0.8
10,814	+				-0.0
10,814	+				-0.3
10,836	+				-0.2
10,836	+				-0.1
10,965	+				-0.2
10,965	+				+1.5
10,965	+				-0.5
10,966	-				-1.1
10,966	-				-0.2
10,966	-				+0.4
10,966	-				-0.3
10,966	-				-0.7
10,966	-				+0.9
11,042	+		RR42_RS00030	0.13	-2.2
11,112	-		RR42_RS00030	0.16	+0.0
11,131	+		RR42_RS00030	0.17	-0.3
11,132	-		RR42_RS00030	0.17	+0.1
11,132	-		RR42_RS00030	0.17	-0.0
11,143	+		RR42_RS00030	0.17	+0.1
11,236	-		RR42_RS00030	0.21	+0.7
11,236	-		RR42_RS00030	0.21	+0.5
11,313	+		RR42_RS00030	0.25	-1.1
11,365	-		RR42_RS00030	0.27	-0.2
11,388	-		RR42_RS00030	0.28	-2.3
11,613	+		RR42_RS00030	0.38	-0.2
11,613	+		RR42_RS00030	0.38	+0.4
11,614	-		RR42_RS00030	0.38	+0.2
11,694	+		RR42_RS00030	0.42	+0.1
11,695	-		RR42_RS00030	0.42	-1.8
11,761	-		RR42_RS00030	0.44	+0.0
11,767	+				+0.2
11,767	+		RR42_RS00030	0.45	+0.1
11,768	-		RR42_RS00030	0.45	-0.2
11,768	-		RR42_RS00030	0.45	-0.3
11,821	+		RR42_RS00030	0.47	+1.2
11,822	-		RR42_RS00030	0.47	-0.7
11,854	+		RR42_RS00030	0.48	+0.7
11,855	-		RR42_RS00030	0.49	-0.3
11,860	+		RR42_RS00030	0.49	-0.5
11,860	+		RR42_RS00030	0.49	+1.5
11,861	-		RR42_RS00030	0.49	-0.2
11,861	-		RR42_RS00030	0.49	-1.3
11,879	+		RR42_RS00030	0.50	+0.9
11,880	-		RR42_RS00030	0.50	-0.1
11,955	+		RR42_RS00030	0.53	-0.5
11,955	+		RR42_RS00030	0.53	+0.3
11,956	-		RR42_RS00030	0.53	+0.2
12,002	+		RR42_RS00030	0.55	+0.1
12,003	-		RR42_RS00030	0.55	-0.6
12,052	+		RR42_RS00030	0.57	-1.3
12,053	-		RR42_RS00030	0.57	+0.5
12,053	-		RR42_RS00030	0.57	-0.9
12,074	+		RR42_RS00030	0.58	+4.9
12,075	-		RR42_RS00030	0.58	+0.6
12,106	+		RR42_RS00030	0.60	+0.7
12,313	+		RR42_RS00030	0.69	-0.0
12,346	+		RR42_RS00030	0.70	-0.2
12,346	+		RR42_RS00030	0.70	+0.0
12,346	+		RR42_RS00030	0.70	+0.2
12,346	+		RR42_RS00030	0.70	+0.3
12,347	-		RR42_RS00030	0.70	-0.5
12,390	+		RR42_RS00030	0.72	-0.1
12,401	-		RR42_RS00030	0.72	-0.2
12,401	-		RR42_RS00030	0.72	-0.3
12,450	+		RR42_RS00030	0.75	+0.8
12,450	+		RR42_RS00030	0.75	-0.9
12,450	+		RR42_RS00030	0.75	-0.1
12,463	-		RR42_RS00030	0.75	-0.0
12,512	+		RR42_RS00030	0.77	-1.2
12,512	+		RR42_RS00030	0.77	-1.4
12,512	+		RR42_RS00030	0.77	-0.4
12,512	+		RR42_RS00030	0.77	+0.4
12,513	-		RR42_RS00030	0.77	-0.7
12,565	+		RR42_RS00030	0.80	-0.7
12,566	-		RR42_RS00030	0.80	-0.2
12,566	-		RR42_RS00030	0.80	-0.1
12,681	+		RR42_RS00030	0.85	-0.1
12,681	+		RR42_RS00030	0.85	-0.8
12,681	+		RR42_RS00030	0.85	+0.3
12,682	-		RR42_RS00030	0.85	+0.2
12,688	+		RR42_RS00030	0.85	-0.8
12,689	-		RR42_RS00030	0.85	+0.5
12,689	-		RR42_RS00030	0.85	+0.5
12,689	-		RR42_RS00030	0.85	+1.2
12,740	+		RR42_RS00030	0.87	+0.2
12,741	-		RR42_RS00030	0.87	+0.1
12,743	+		RR42_RS00030	0.87	-0.1
12,744	-		RR42_RS00030	0.87	-1.0
12,744	-		RR42_RS00030	0.87	-0.6
12,744	-		RR42_RS00030	0.87	-1.0
12,758	+		RR42_RS00030	0.88	+0.7
12,758	+		RR42_RS00030	0.88	+0.4
12,759	-		RR42_RS00030	0.88	-0.3
12,759	-		RR42_RS00030	0.88	-0.2
12,759	-		RR42_RS00030	0.88	+0.7
12,759	-		RR42_RS00030	0.88	+1.0
12,766	+		RR42_RS00030	0.88	-1.4
12,821	+				+2.2
12,824	+				-2.5
12,825	-				-0.1
12,874	+				+1.2
12,874	+				-0.1
12,874	+				-0.5
12,875	-				-1.6
12,884	+				+0.1
12,884	+				+0.4
12,885	-				-2.1
12,885	-				+0.2
12,885	-				-1.2
12,954	+				-1.2
12,973	+				+0.8
12,973	+				-1.6
12,973	+				-0.1
12,974	-				-0.2
13,079	+				-0.9
13,080	-				-0.1
13,127	+				+0.3
13,127	+				-1.4
13,128	-				+0.1
13,128	-				-1.3
13,583	+		RR42_RS00035	0.70	-0.3
13,639	+		RR42_RS00035	0.80	+1.0
13,640	-		RR42_RS00035	0.80	-0.7
13,684	-		RR42_RS00035	0.88	-0.1
13,686	+		RR42_RS00035	0.88	-0.4
13,686	+		RR42_RS00035	0.88	+1.0
13,686	+		RR42_RS00035	0.88	-0.0
13,687	-		RR42_RS00035	0.88	+0.5
13,792	-				-0.9
13,792	-				+0.2
13,879	-				+0.2
13,879	-				-0.0
13,879	-				-0.7
13,901	+				-0.7
13,901	+				-1.9
13,902	-				+0.7
13,902	-				-0.9
13,902	-				-0.1
13,902	-				+0.7