Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_621 and Pf6N2E2_622 overlap by 4 nucleotides Pf6N2E2_622 and Pf6N2E2_623 overlap by 8 nucleotides Pf6N2E2_623 and Pf6N2E2_624 overlap by 4 nucleotides
Pf6N2E2_621 - TPR domain protein in aerotolerance operon, at 707,263 to 708,999
_621
Pf6N2E2_622 - BatA (Bacteroides aerotolerance operon), at 708,996 to 710,075
_622
Pf6N2E2_623 - FIG00954674: hypothetical protein, at 710,068 to 710,562
_623
Pf6N2E2_624 - hypothetical protein PA3071, at 710,559 to 711,503
_624
Position (kb) 708
709
710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 707.996 kb on - strand, within Pf6N2E2_621 at 708.275 kb on + strand, within Pf6N2E2_621 at 708.567 kb on + strand, within Pf6N2E2_621 at 708.634 kb on + strand, within Pf6N2E2_621 at 708.634 kb on + strand, within Pf6N2E2_621 at 708.635 kb on - strand, within Pf6N2E2_621 at 708.861 kb on + strand at 708.862 kb on - strand at 708.862 kb on - strand at 708.950 kb on - strand at 708.950 kb on - strand at 708.958 kb on + strand at 708.959 kb on - strand at 709.165 kb on + strand, within Pf6N2E2_622 at 709.166 kb on - strand, within Pf6N2E2_622 at 709.245 kb on + strand, within Pf6N2E2_622 at 709.639 kb on + strand, within Pf6N2E2_622 at 709.639 kb on + strand, within Pf6N2E2_622 at 709.640 kb on - strand, within Pf6N2E2_622 at 710.168 kb on - strand, within Pf6N2E2_623 at 710.628 kb on - strand at 711.067 kb on + strand, within Pf6N2E2_624
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 707,996 - Pf6N2E2_621 0.42 -1.9 708,275 + Pf6N2E2_621 0.58 -1.0 708,567 + Pf6N2E2_621 0.75 -2.0 708,634 + Pf6N2E2_621 0.79 -1.5 708,634 + Pf6N2E2_621 0.79 -2.2 708,635 - Pf6N2E2_621 0.79 -1.3 708,861 + -1.3 708,862 - -1.5 708,862 - +1.0 708,950 - -0.5 708,950 - -0.4 708,958 + -1.3 708,959 - -0.6 709,165 + Pf6N2E2_622 0.16 -3.8 709,166 - Pf6N2E2_622 0.16 -1.3 709,245 + Pf6N2E2_622 0.23 -3.3 709,639 + Pf6N2E2_622 0.60 -1.5 709,639 + Pf6N2E2_622 0.60 -1.7 709,640 - Pf6N2E2_622 0.60 -1.6 710,168 - Pf6N2E2_623 0.20 -1.2 710,628 - -0.7 711,067 + Pf6N2E2_624 0.54 -2.0
Or see this region's nucleotide sequence