Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5162

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5161 and Pf6N2E2_5162 overlap by 1 nucleotidesPf6N2E2_5162 and Pf6N2E2_5163 overlap by 45 nucleotidesPf6N2E2_5163 and Pf6N2E2_5164 are separated by 191 nucleotides Pf6N2E2_5161 - Valine--pyruvate aminotransferase (EC 2.6.1.66) ## AvtA, at 5,950,286 to 5,951,458 _5161 Pf6N2E2_5162 - Sugar/maltose fermentation stimulation protein homolog, at 5,951,458 to 5,952,204 _5162 Pf6N2E2_5163 - Iron-sulfur cluster-binding protein, Rieske family, at 5,952,160 to 5,952,477 _5163 Pf6N2E2_5164 - Periplasmic hemin-binding protein, at 5,952,669 to 5,953,547 _5164 Position (kb) 5951 5952 5953Strain fitness (log2 ratio) -2 -1 0 1 2at 5950.478 kb on + strand, within Pf6N2E2_5161at 5950.529 kb on + strand, within Pf6N2E2_5161at 5950.529 kb on + strand, within Pf6N2E2_5161at 5950.904 kb on + strand, within Pf6N2E2_5161at 5950.904 kb on + strand, within Pf6N2E2_5161at 5950.904 kb on + strand, within Pf6N2E2_5161at 5950.904 kb on + strand, within Pf6N2E2_5161at 5950.904 kb on + strand, within Pf6N2E2_5161at 5950.904 kb on + strand, within Pf6N2E2_5161at 5950.905 kb on - strand, within Pf6N2E2_5161at 5950.905 kb on - strand, within Pf6N2E2_5161at 5950.905 kb on - strand, within Pf6N2E2_5161at 5950.905 kb on - strand, within Pf6N2E2_5161at 5950.919 kb on + strand, within Pf6N2E2_5161at 5950.919 kb on + strand, within Pf6N2E2_5161at 5950.920 kb on - strand, within Pf6N2E2_5161at 5950.920 kb on - strand, within Pf6N2E2_5161at 5950.988 kb on + strand, within Pf6N2E2_5161at 5950.988 kb on + strand, within Pf6N2E2_5161at 5950.988 kb on + strand, within Pf6N2E2_5161at 5950.989 kb on - strand, within Pf6N2E2_5161at 5950.989 kb on - strand, within Pf6N2E2_5161at 5951.075 kb on + strand, within Pf6N2E2_5161at 5951.075 kb on + strand, within Pf6N2E2_5161at 5951.075 kb on + strand, within Pf6N2E2_5161at 5951.075 kb on + strand, within Pf6N2E2_5161at 5951.075 kb on + strand, within Pf6N2E2_5161at 5951.076 kb on - strand, within Pf6N2E2_5161at 5951.076 kb on - strand, within Pf6N2E2_5161at 5951.076 kb on - strand, within Pf6N2E2_5161at 5951.076 kb on - strand, within Pf6N2E2_5161at 5951.188 kb on - strand, within Pf6N2E2_5161at 5951.246 kb on + strand, within Pf6N2E2_5161at 5951.246 kb on + strand, within Pf6N2E2_5161at 5951.246 kb on + strand, within Pf6N2E2_5161at 5951.247 kb on - strand, within Pf6N2E2_5161at 5951.247 kb on - strand, within Pf6N2E2_5161at 5951.252 kb on + strand, within Pf6N2E2_5161at 5951.252 kb on + strand, within Pf6N2E2_5161at 5951.252 kb on + strand, within Pf6N2E2_5161at 5951.252 kb on + strand, within Pf6N2E2_5161at 5951.253 kb on - strand, within Pf6N2E2_5161at 5951.253 kb on - strand, within Pf6N2E2_5161at 5951.384 kb on + strandat 5951.439 kb on + strandat 5951.503 kb on + strandat 5951.553 kb on + strand, within Pf6N2E2_5162at 5951.553 kb on + strand, within Pf6N2E2_5162at 5951.553 kb on + strand, within Pf6N2E2_5162at 5951.565 kb on + strand, within Pf6N2E2_5162at 5951.565 kb on + strand, within Pf6N2E2_5162at 5951.794 kb on + strand, within Pf6N2E2_5162at 5951.833 kb on + strand, within Pf6N2E2_5162at 5951.834 kb on - strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.992 kb on + strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5951.993 kb on - strand, within Pf6N2E2_5162at 5952.050 kb on + strand, within Pf6N2E2_5162at 5952.051 kb on - strand, within Pf6N2E2_5162at 5952.052 kb on + strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.053 kb on - strand, within Pf6N2E2_5162at 5952.103 kb on + strand, within Pf6N2E2_5162at 5952.161 kb on + strandat 5952.161 kb on + strandat 5952.256 kb on + strand, within Pf6N2E2_5163at 5952.256 kb on + strand, within Pf6N2E2_5163at 5952.256 kb on + strand, within Pf6N2E2_5163at 5952.368 kb on + strand, within Pf6N2E2_5163at 5952.368 kb on + strand, within Pf6N2E2_5163at 5952.368 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.374 kb on + strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.375 kb on - strand, within Pf6N2E2_5163at 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.487 kb on + strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.488 kb on - strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.489 kb on + strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.490 kb on - strandat 5952.547 kb on - strandat 5952.620 kb on + strandat 5952.621 kb on - strandat 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.171 kb on + strand, within Pf6N2E2_5164at 5953.172 kb on - strand, within Pf6N2E2_5164at 5953.172 kb on - strand, within Pf6N2E2_5164

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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5,950,478 + Pf6N2E2_5161 0.16 -0.5
5,950,529 + Pf6N2E2_5161 0.21 +0.7
5,950,529 + Pf6N2E2_5161 0.21 -0.5
5,950,904 + Pf6N2E2_5161 0.53 +0.0
5,950,904 + Pf6N2E2_5161 0.53 +0.5
5,950,904 + Pf6N2E2_5161 0.53 +0.5
5,950,904 + Pf6N2E2_5161 0.53 -0.3
5,950,904 + Pf6N2E2_5161 0.53 +0.0
5,950,904 + Pf6N2E2_5161 0.53 -0.4
5,950,905 - Pf6N2E2_5161 0.53 +1.0
5,950,905 - Pf6N2E2_5161 0.53 -0.1
5,950,905 - Pf6N2E2_5161 0.53 +1.2
5,950,905 - Pf6N2E2_5161 0.53 +1.5
5,950,919 + Pf6N2E2_5161 0.54 +0.7
5,950,919 + Pf6N2E2_5161 0.54 +0.5
5,950,920 - Pf6N2E2_5161 0.54 -0.7
5,950,920 - Pf6N2E2_5161 0.54 -0.5
5,950,988 + Pf6N2E2_5161 0.60 -1.3
5,950,988 + Pf6N2E2_5161 0.60 +0.3
5,950,988 + Pf6N2E2_5161 0.60 +0.4
5,950,989 - Pf6N2E2_5161 0.60 +1.9
5,950,989 - Pf6N2E2_5161 0.60 -0.0
5,951,075 + Pf6N2E2_5161 0.67 -0.3
5,951,075 + Pf6N2E2_5161 0.67 -0.4
5,951,075 + Pf6N2E2_5161 0.67 +0.3
5,951,075 + Pf6N2E2_5161 0.67 +0.6
5,951,075 + Pf6N2E2_5161 0.67 +0.3
5,951,076 - Pf6N2E2_5161 0.67 +0.8
5,951,076 - Pf6N2E2_5161 0.67 +0.6
5,951,076 - Pf6N2E2_5161 0.67 +1.3
5,951,076 - Pf6N2E2_5161 0.67 +0.4
5,951,188 - Pf6N2E2_5161 0.77 +0.5
5,951,246 + Pf6N2E2_5161 0.82 +0.3
5,951,246 + Pf6N2E2_5161 0.82 -0.8
5,951,246 + Pf6N2E2_5161 0.82 -0.4
5,951,247 - Pf6N2E2_5161 0.82 -1.5
5,951,247 - Pf6N2E2_5161 0.82 +0.7
5,951,252 + Pf6N2E2_5161 0.82 +0.6
5,951,252 + Pf6N2E2_5161 0.82 +0.2
5,951,252 + Pf6N2E2_5161 0.82 +0.3
5,951,252 + Pf6N2E2_5161 0.82 +0.7
5,951,253 - Pf6N2E2_5161 0.82 -0.1
5,951,253 - Pf6N2E2_5161 0.82 +1.0
5,951,384 + +0.7
5,951,439 + +0.7
5,951,503 + -0.8
5,951,553 + Pf6N2E2_5162 0.13 +0.5
5,951,553 + Pf6N2E2_5162 0.13 +0.7
5,951,553 + Pf6N2E2_5162 0.13 +0.4
5,951,565 + Pf6N2E2_5162 0.14 +0.5
5,951,565 + Pf6N2E2_5162 0.14 +0.5
5,951,794 + Pf6N2E2_5162 0.45 +0.2
5,951,833 + Pf6N2E2_5162 0.50 -0.0
5,951,834 - Pf6N2E2_5162 0.50 -1.7
5,951,992 + Pf6N2E2_5162 0.71 -1.5
5,951,992 + Pf6N2E2_5162 0.71 -0.5
5,951,992 + Pf6N2E2_5162 0.71 -0.5
5,951,992 + Pf6N2E2_5162 0.71 -0.4
5,951,992 + Pf6N2E2_5162 0.71 +0.6
5,951,992 + Pf6N2E2_5162 0.71 -0.9
5,951,992 + Pf6N2E2_5162 0.71 +0.1
5,951,992 + Pf6N2E2_5162 0.71 -1.0
5,951,993 - Pf6N2E2_5162 0.72 -0.7
5,951,993 - Pf6N2E2_5162 0.72 +0.4
5,951,993 - Pf6N2E2_5162 0.72 +0.5
5,951,993 - Pf6N2E2_5162 0.72 +0.7
5,951,993 - Pf6N2E2_5162 0.72 -0.2
5,952,050 + Pf6N2E2_5162 0.79 +0.8
5,952,051 - Pf6N2E2_5162 0.79 +1.3
5,952,052 + Pf6N2E2_5162 0.80 +0.2
5,952,053 - Pf6N2E2_5162 0.80 -0.0
5,952,053 - Pf6N2E2_5162 0.80 -0.2
5,952,053 - Pf6N2E2_5162 0.80 +0.5
5,952,053 - Pf6N2E2_5162 0.80 -0.4
5,952,103 + Pf6N2E2_5162 0.86 +0.5
5,952,161 + +0.2
5,952,161 + -0.1
5,952,256 + Pf6N2E2_5163 0.30 +0.3
5,952,256 + Pf6N2E2_5163 0.30 +0.5
5,952,256 + Pf6N2E2_5163 0.30 -0.3
5,952,368 + Pf6N2E2_5163 0.65 +0.7
5,952,368 + Pf6N2E2_5163 0.65 +1.1
5,952,368 + Pf6N2E2_5163 0.65 -1.0
5,952,374 + Pf6N2E2_5163 0.67 -0.1
5,952,374 + Pf6N2E2_5163 0.67 +0.4
5,952,374 + Pf6N2E2_5163 0.67 +0.5
5,952,374 + Pf6N2E2_5163 0.67 -2.2
5,952,374 + Pf6N2E2_5163 0.67 -0.0
5,952,374 + Pf6N2E2_5163 0.67 -0.6
5,952,374 + Pf6N2E2_5163 0.67 +0.3
5,952,374 + Pf6N2E2_5163 0.67 +0.7
5,952,374 + Pf6N2E2_5163 0.67 +1.1
5,952,374 + Pf6N2E2_5163 0.67 -0.0
5,952,375 - Pf6N2E2_5163 0.68 +0.6
5,952,375 - Pf6N2E2_5163 0.68 +0.6
5,952,375 - Pf6N2E2_5163 0.68 +0.3
5,952,375 - Pf6N2E2_5163 0.68 +0.2
5,952,375 - Pf6N2E2_5163 0.68 +0.1
5,952,375 - Pf6N2E2_5163 0.68 +0.3
5,952,375 - Pf6N2E2_5163 0.68 +0.2
5,952,375 - Pf6N2E2_5163 0.68 +0.7
5,952,375 - Pf6N2E2_5163 0.68 +0.1
5,952,375 - Pf6N2E2_5163 0.68 +0.3
5,952,375 - Pf6N2E2_5163 0.68 +0.4
5,952,375 - Pf6N2E2_5163 0.68 -0.4
5,952,375 - Pf6N2E2_5163 0.68 +0.0
5,952,487 + -0.1
5,952,487 + +1.1
5,952,487 + -0.6
5,952,487 + +0.0
5,952,487 + +1.0
5,952,487 + +0.5
5,952,487 + -0.0
5,952,487 + +0.6
5,952,487 + -0.8
5,952,487 + -0.7
5,952,487 + -0.2
5,952,487 + +0.1
5,952,487 + +1.4
5,952,487 + -1.1
5,952,487 + +0.4
5,952,487 + +0.6
5,952,487 + +1.1
5,952,487 + +0.9
5,952,487 + -0.9
5,952,487 + -0.5
5,952,487 + +0.3
5,952,487 + +0.1
5,952,488 - +0.2
5,952,488 - -0.3
5,952,488 - +0.9
5,952,488 - +0.3
5,952,488 - -0.0
5,952,488 - +0.4
5,952,488 - +0.9
5,952,489 + +0.3
5,952,489 + +0.2
5,952,489 + +0.2
5,952,489 + +0.2
5,952,489 + +0.4
5,952,489 + +0.6
5,952,489 + -0.5
5,952,489 + +0.4
5,952,489 + +1.0
5,952,490 - -0.4
5,952,490 - +0.5
5,952,490 - -0.1
5,952,490 - +1.1
5,952,490 - +1.1
5,952,490 - -0.3
5,952,490 - -1.0
5,952,490 - -0.3
5,952,490 - +0.3
5,952,547 - +0.2
5,952,620 + -0.1
5,952,621 - +0.6
5,953,171 + Pf6N2E2_5164 0.57 +0.1
5,953,171 + Pf6N2E2_5164 0.57 +0.9
5,953,171 + Pf6N2E2_5164 0.57 +0.7
5,953,171 + Pf6N2E2_5164 0.57 +0.3
5,953,172 - Pf6N2E2_5164 0.57 +0.2
5,953,172 - Pf6N2E2_5164 0.57 +0.8

Or see this region's nucleotide sequence