Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4735

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4734 and Pf6N2E2_4735 are separated by 293 nucleotidesPf6N2E2_4735 and Pf6N2E2_4736 are separated by 295 nucleotides Pf6N2E2_4734 - Acyltransferase family protein, at 5,470,695 to 5,471,588 _4734 Pf6N2E2_4735 - Ribosomal protein S6 glutaminyl transferase, at 5,471,882 to 5,472,388 _4735 Pf6N2E2_4736 - YD repeat protein, at 5,472,684 to 5,473,718 _4736 Position (kb) 5471 5472 5473Strain fitness (log2 ratio) -2 -1 0 1 2at 5470.915 kb on + strand, within Pf6N2E2_4734at 5470.915 kb on + strand, within Pf6N2E2_4734at 5471.065 kb on + strand, within Pf6N2E2_4734at 5471.065 kb on + strand, within Pf6N2E2_4734at 5471.065 kb on + strand, within Pf6N2E2_4734at 5471.065 kb on + strand, within Pf6N2E2_4734at 5471.065 kb on + strand, within Pf6N2E2_4734at 5471.066 kb on - strand, within Pf6N2E2_4734at 5471.066 kb on - strand, within Pf6N2E2_4734at 5471.066 kb on - strand, within Pf6N2E2_4734at 5471.066 kb on - strand, within Pf6N2E2_4734at 5471.173 kb on + strand, within Pf6N2E2_4734at 5471.174 kb on - strand, within Pf6N2E2_4734at 5471.174 kb on - strand, within Pf6N2E2_4734at 5471.338 kb on + strand, within Pf6N2E2_4734at 5471.338 kb on + strand, within Pf6N2E2_4734at 5471.338 kb on + strand, within Pf6N2E2_4734at 5471.339 kb on - strand, within Pf6N2E2_4734at 5471.339 kb on - strand, within Pf6N2E2_4734at 5471.464 kb on + strand, within Pf6N2E2_4734at 5471.464 kb on + strand, within Pf6N2E2_4734at 5471.464 kb on + strand, within Pf6N2E2_4734at 5471.465 kb on - strand, within Pf6N2E2_4734at 5471.465 kb on - strand, within Pf6N2E2_4734at 5471.465 kb on - strand, within Pf6N2E2_4734at 5471.547 kb on + strandat 5471.547 kb on + strandat 5471.547 kb on + strandat 5471.588 kb on + strandat 5471.588 kb on + strandat 5471.588 kb on + strandat 5471.588 kb on + strandat 5471.588 kb on + strandat 5471.588 kb on + strandat 5471.588 kb on + strandat 5471.589 kb on - strandat 5471.589 kb on - strandat 5471.589 kb on - strandat 5471.589 kb on - strandat 5471.589 kb on - strandat 5471.623 kb on + strandat 5471.623 kb on + strandat 5471.683 kb on - strandat 5471.744 kb on - strandat 5471.849 kb on + strandat 5471.850 kb on - strandat 5471.876 kb on + strandat 5471.958 kb on - strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.963 kb on + strand, within Pf6N2E2_4735at 5471.964 kb on - strand, within Pf6N2E2_4735at 5471.964 kb on - strand, within Pf6N2E2_4735at 5471.964 kb on - strand, within Pf6N2E2_4735at 5472.125 kb on + strand, within Pf6N2E2_4735at 5472.125 kb on + strand, within Pf6N2E2_4735at 5472.126 kb on - strand, within Pf6N2E2_4735at 5472.296 kb on + strand, within Pf6N2E2_4735at 5472.296 kb on + strand, within Pf6N2E2_4735at 5472.297 kb on - strand, within Pf6N2E2_4735at 5472.373 kb on + strandat 5472.374 kb on - strandat 5472.468 kb on + strandat 5472.468 kb on + strandat 5472.468 kb on + strandat 5472.468 kb on + strandat 5472.469 kb on - strandat 5472.469 kb on - strandat 5472.469 kb on - strandat 5472.469 kb on - strandat 5472.498 kb on + strandat 5472.519 kb on + strandat 5472.595 kb on - strandat 5472.742 kb on + strandat 5472.743 kb on - strandat 5472.783 kb on + strandat 5472.800 kb on + strand, within Pf6N2E2_4736at 5472.868 kb on - strand, within Pf6N2E2_4736at 5472.914 kb on + strand, within Pf6N2E2_4736at 5472.949 kb on - strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.016 kb on + strand, within Pf6N2E2_4736at 5473.017 kb on - strand, within Pf6N2E2_4736at 5473.017 kb on - strand, within Pf6N2E2_4736at 5473.017 kb on - strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.049 kb on + strand, within Pf6N2E2_4736at 5473.050 kb on - strand, within Pf6N2E2_4736at 5473.050 kb on - strand, within Pf6N2E2_4736at 5473.053 kb on + strand, within Pf6N2E2_4736at 5473.053 kb on + strand, within Pf6N2E2_4736at 5473.054 kb on - strand, within Pf6N2E2_4736at 5473.120 kb on - strand, within Pf6N2E2_4736at 5473.120 kb on - strand, within Pf6N2E2_4736at 5473.136 kb on + strand, within Pf6N2E2_4736at 5473.136 kb on + strand, within Pf6N2E2_4736at 5473.137 kb on - strand, within Pf6N2E2_4736at 5473.178 kb on + strand, within Pf6N2E2_4736at 5473.231 kb on + strand, within Pf6N2E2_4736at 5473.231 kb on + strand, within Pf6N2E2_4736at 5473.232 kb on - strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.233 kb on + strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.234 kb on - strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.237 kb on + strand, within Pf6N2E2_4736at 5473.238 kb on - strand, within Pf6N2E2_4736at 5473.238 kb on - strand, within Pf6N2E2_4736at 5473.238 kb on - strand, within Pf6N2E2_4736at 5473.337 kb on - strand, within Pf6N2E2_4736

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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5,470,915 + Pf6N2E2_4734 0.25 +2.0
5,470,915 + Pf6N2E2_4734 0.25 -0.0
5,471,065 + Pf6N2E2_4734 0.41 +0.2
5,471,065 + Pf6N2E2_4734 0.41 +0.1
5,471,065 + Pf6N2E2_4734 0.41 +0.8
5,471,065 + Pf6N2E2_4734 0.41 -0.5
5,471,065 + Pf6N2E2_4734 0.41 +0.2
5,471,066 - Pf6N2E2_4734 0.41 -0.4
5,471,066 - Pf6N2E2_4734 0.41 -0.2
5,471,066 - Pf6N2E2_4734 0.41 -1.3
5,471,066 - Pf6N2E2_4734 0.41 +1.1
5,471,173 + Pf6N2E2_4734 0.53 +0.9
5,471,174 - Pf6N2E2_4734 0.54 +0.1
5,471,174 - Pf6N2E2_4734 0.54 +0.2
5,471,338 + Pf6N2E2_4734 0.72 +0.3
5,471,338 + Pf6N2E2_4734 0.72 +0.3
5,471,338 + Pf6N2E2_4734 0.72 +1.0
5,471,339 - Pf6N2E2_4734 0.72 +0.8
5,471,339 - Pf6N2E2_4734 0.72 +0.7
5,471,464 + Pf6N2E2_4734 0.86 +0.2
5,471,464 + Pf6N2E2_4734 0.86 -1.0
5,471,464 + Pf6N2E2_4734 0.86 -0.2
5,471,465 - Pf6N2E2_4734 0.86 +0.1
5,471,465 - Pf6N2E2_4734 0.86 -0.8
5,471,465 - Pf6N2E2_4734 0.86 +0.5
5,471,547 + +0.2
5,471,547 + +1.3
5,471,547 + +1.6
5,471,588 + +0.9
5,471,588 + -0.5
5,471,588 + +0.3
5,471,588 + +0.3
5,471,588 + +0.6
5,471,588 + +0.9
5,471,588 + -1.8
5,471,589 - -0.5
5,471,589 - -0.7
5,471,589 - +0.7
5,471,589 - +0.8
5,471,589 - -0.3
5,471,623 + +0.5
5,471,623 + +2.0
5,471,683 - -1.5
5,471,744 - -0.1
5,471,849 + +0.4
5,471,850 - -0.8
5,471,876 + -1.8
5,471,958 - Pf6N2E2_4735 0.15 -0.0
5,471,963 + Pf6N2E2_4735 0.16 -0.6
5,471,963 + Pf6N2E2_4735 0.16 +0.4
5,471,963 + Pf6N2E2_4735 0.16 +0.4
5,471,963 + Pf6N2E2_4735 0.16 +0.5
5,471,963 + Pf6N2E2_4735 0.16 -0.4
5,471,963 + Pf6N2E2_4735 0.16 +0.5
5,471,963 + Pf6N2E2_4735 0.16 -0.1
5,471,964 - Pf6N2E2_4735 0.16 -0.4
5,471,964 - Pf6N2E2_4735 0.16 -0.8
5,471,964 - Pf6N2E2_4735 0.16 +0.3
5,472,125 + Pf6N2E2_4735 0.48 +1.0
5,472,125 + Pf6N2E2_4735 0.48 +0.4
5,472,126 - Pf6N2E2_4735 0.48 +0.7
5,472,296 + Pf6N2E2_4735 0.82 +1.3
5,472,296 + Pf6N2E2_4735 0.82 -0.1
5,472,297 - Pf6N2E2_4735 0.82 +0.5
5,472,373 + -0.6
5,472,374 - +1.2
5,472,468 + +0.8
5,472,468 + +0.8
5,472,468 + +1.3
5,472,468 + +2.0
5,472,469 - +0.8
5,472,469 - +0.8
5,472,469 - +0.2
5,472,469 - -0.0
5,472,498 + +0.1
5,472,519 + -0.2
5,472,595 - +0.3
5,472,742 + -0.3
5,472,743 - +1.0
5,472,783 + +0.9
5,472,800 + Pf6N2E2_4736 0.11 -0.3
5,472,868 - Pf6N2E2_4736 0.18 -0.5
5,472,914 + Pf6N2E2_4736 0.22 +0.7
5,472,949 - Pf6N2E2_4736 0.26 +1.0
5,473,016 + Pf6N2E2_4736 0.32 -0.4
5,473,016 + Pf6N2E2_4736 0.32 -1.1
5,473,016 + Pf6N2E2_4736 0.32 -0.2
5,473,016 + Pf6N2E2_4736 0.32 -0.1
5,473,017 - Pf6N2E2_4736 0.32 -0.2
5,473,017 - Pf6N2E2_4736 0.32 +1.4
5,473,017 - Pf6N2E2_4736 0.32 -0.1
5,473,049 + Pf6N2E2_4736 0.35 +0.2
5,473,049 + Pf6N2E2_4736 0.35 +0.2
5,473,049 + Pf6N2E2_4736 0.35 -0.2
5,473,049 + Pf6N2E2_4736 0.35 +0.3
5,473,049 + Pf6N2E2_4736 0.35 -0.4
5,473,050 - Pf6N2E2_4736 0.35 +0.5
5,473,050 - Pf6N2E2_4736 0.35 +1.1
5,473,053 + Pf6N2E2_4736 0.36 +0.2
5,473,053 + Pf6N2E2_4736 0.36 -0.3
5,473,054 - Pf6N2E2_4736 0.36 +0.3
5,473,120 - Pf6N2E2_4736 0.42 +0.0
5,473,120 - Pf6N2E2_4736 0.42 +0.4
5,473,136 + Pf6N2E2_4736 0.44 +0.4
5,473,136 + Pf6N2E2_4736 0.44 +0.2
5,473,137 - Pf6N2E2_4736 0.44 +0.4
5,473,178 + Pf6N2E2_4736 0.48 +0.5
5,473,231 + Pf6N2E2_4736 0.53 -0.5
5,473,231 + Pf6N2E2_4736 0.53 +0.3
5,473,232 - Pf6N2E2_4736 0.53 +0.4
5,473,233 + Pf6N2E2_4736 0.53 +0.7
5,473,233 + Pf6N2E2_4736 0.53 +0.5
5,473,233 + Pf6N2E2_4736 0.53 +0.0
5,473,233 + Pf6N2E2_4736 0.53 -0.4
5,473,233 + Pf6N2E2_4736 0.53 -0.3
5,473,233 + Pf6N2E2_4736 0.53 +0.7
5,473,233 + Pf6N2E2_4736 0.53 +0.7
5,473,233 + Pf6N2E2_4736 0.53 +0.2
5,473,233 + Pf6N2E2_4736 0.53 +0.3
5,473,233 + Pf6N2E2_4736 0.53 -0.3
5,473,234 - Pf6N2E2_4736 0.53 +0.6
5,473,234 - Pf6N2E2_4736 0.53 -1.3
5,473,234 - Pf6N2E2_4736 0.53 +0.6
5,473,234 - Pf6N2E2_4736 0.53 +0.5
5,473,234 - Pf6N2E2_4736 0.53 -0.3
5,473,234 - Pf6N2E2_4736 0.53 +0.0
5,473,237 + Pf6N2E2_4736 0.53 +1.1
5,473,237 + Pf6N2E2_4736 0.53 +0.2
5,473,237 + Pf6N2E2_4736 0.53 -0.3
5,473,237 + Pf6N2E2_4736 0.53 +1.0
5,473,237 + Pf6N2E2_4736 0.53 -0.3
5,473,238 - Pf6N2E2_4736 0.54 +0.1
5,473,238 - Pf6N2E2_4736 0.54 +1.0
5,473,238 - Pf6N2E2_4736 0.54 +0.8
5,473,337 - Pf6N2E2_4736 0.63 +0.3

Or see this region's nucleotide sequence