Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3148

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3146 and Pf6N2E2_3147 are separated by 45 nucleotidesPf6N2E2_3147 and Pf6N2E2_3148 are separated by 11 nucleotidesPf6N2E2_3148 and Pf6N2E2_3149 are separated by 5 nucleotidesPf6N2E2_3149 and Pf6N2E2_3150 are separated by 251 nucleotides Pf6N2E2_3146 - LSU ribosomal protein L19p, at 3,639,674 to 3,640,024 _3146 Pf6N2E2_3147 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 3,640,070 to 3,640,813 _3147 Pf6N2E2_3148 - 16S rRNA processing protein RimM, at 3,640,825 to 3,641,361 _3148 Pf6N2E2_3149 - SSU ribosomal protein S16p, at 3,641,367 to 3,641,618 _3149 Pf6N2E2_3150 - Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1), at 3,641,870 to 3,643,246 _3150 Position (kb) 3640 3641 3642Strain fitness (log2 ratio) -2 -1 0 1 2at 3640.072 kb on - strandat 3640.072 kb on - strandat 3640.072 kb on - strandat 3640.072 kb on - strandat 3641.903 kb on - strandat 3641.903 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
3,640,072 - -0.3
3,640,072 - -0.4
3,640,072 - +1.8
3,640,072 - -2.1
3,641,903 - +0.1
3,641,903 - +0.1

Or see this region's nucleotide sequence