Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_723

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_721 and Pf1N1B4_722 are separated by 4 nucleotidesPf1N1B4_722 and Pf1N1B4_723 are separated by 148 nucleotidesPf1N1B4_723 and Pf1N1B4_724 overlap by 11 nucleotidesPf1N1B4_724 and Pf1N1B4_725 are separated by 218 nucleotides Pf1N1B4_721 - InaA protein, at 824,741 to 825,454 _721 Pf1N1B4_722 - SAM-dependent methyltransferases, at 825,459 to 826,127 _722 Pf1N1B4_723 - two-component system sensor protein, at 826,276 to 827,556 _723 Pf1N1B4_724 - DNA-binding response regulator ColR, at 827,546 to 828,229 _724 Pf1N1B4_725 - PAP2 superfamily protein, at 828,448 to 829,191 _725 Position (kb) 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 825.297 kb on + strand, within Pf1N1B4_721at 825.298 kb on - strand, within Pf1N1B4_721at 825.372 kb on - strand, within Pf1N1B4_721at 825.400 kb on - strandat 825.461 kb on - strandat 825.461 kb on - strandat 825.471 kb on + strandat 825.472 kb on - strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.474 kb on + strandat 825.475 kb on - strandat 825.478 kb on + strandat 825.478 kb on + strandat 825.478 kb on + strandat 825.478 kb on + strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.479 kb on - strandat 825.481 kb on - strandat 825.496 kb on + strandat 825.496 kb on + strandat 825.496 kb on + strandat 825.497 kb on - strandat 825.497 kb on - strandat 825.497 kb on - strandat 825.605 kb on + strand, within Pf1N1B4_722at 825.822 kb on + strand, within Pf1N1B4_722at 825.822 kb on + strand, within Pf1N1B4_722at 826.066 kb on + strandat 826.067 kb on - strandat 826.090 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.164 kb on + strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.165 kb on - strandat 826.169 kb on - strandat 826.216 kb on + strandat 826.216 kb on + strandat 826.216 kb on + strandat 826.217 kb on - strandat 826.472 kb on - strand, within Pf1N1B4_723at 826.472 kb on - strand, within Pf1N1B4_723at 826.472 kb on - strand, within Pf1N1B4_723at 826.523 kb on + strand, within Pf1N1B4_723at 826.523 kb on + strand, within Pf1N1B4_723at 826.523 kb on + strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.524 kb on - strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.538 kb on + strand, within Pf1N1B4_723at 826.539 kb on - strand, within Pf1N1B4_723at 826.539 kb on - strand, within Pf1N1B4_723at 826.539 kb on - strand, within Pf1N1B4_723at 826.551 kb on + strand, within Pf1N1B4_723at 826.551 kb on + strand, within Pf1N1B4_723at 826.594 kb on - strand, within Pf1N1B4_723at 826.594 kb on - strand, within Pf1N1B4_723at 826.596 kb on - strand, within Pf1N1B4_723at 826.675 kb on + strand, within Pf1N1B4_723at 826.888 kb on + strand, within Pf1N1B4_723at 826.888 kb on + strand, within Pf1N1B4_723at 826.888 kb on + strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 826.889 kb on - strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.000 kb on + strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.001 kb on - strand, within Pf1N1B4_723at 827.029 kb on + strand, within Pf1N1B4_723at 827.113 kb on + strand, within Pf1N1B4_723at 827.114 kb on - strand, within Pf1N1B4_723at 827.135 kb on - strand, within Pf1N1B4_723at 827.135 kb on - strand, within Pf1N1B4_723at 827.153 kb on - strand, within Pf1N1B4_723at 827.210 kb on + strand, within Pf1N1B4_723at 827.211 kb on - strand, within Pf1N1B4_723at 827.246 kb on + strand, within Pf1N1B4_723at 827.247 kb on - strand, within Pf1N1B4_723at 827.247 kb on - strand, within Pf1N1B4_723at 827.247 kb on - strand, within Pf1N1B4_723at 827.308 kb on + strand, within Pf1N1B4_723at 827.309 kb on - strand, within Pf1N1B4_723at 827.339 kb on + strand, within Pf1N1B4_723at 827.340 kb on - strand, within Pf1N1B4_723at 827.340 kb on - strand, within Pf1N1B4_723at 827.340 kb on - strand, within Pf1N1B4_723at 827.340 kb on - strand, within Pf1N1B4_723at 827.340 kb on - strand, within Pf1N1B4_723at 827.340 kb on - strand, within Pf1N1B4_723at 827.547 kb on + strandat 827.548 kb on - strandat 827.723 kb on + strand, within Pf1N1B4_724at 827.724 kb on - strand, within Pf1N1B4_724at 827.724 kb on - strand, within Pf1N1B4_724at 827.724 kb on - strand, within Pf1N1B4_724at 827.724 kb on - strand, within Pf1N1B4_724at 827.724 kb on - strand, within Pf1N1B4_724at 827.827 kb on - strand, within Pf1N1B4_724at 827.934 kb on + strand, within Pf1N1B4_724at 828.174 kb on + strandat 828.244 kb on + strandat 828.252 kb on - strandat 828.276 kb on - strandat 828.316 kb on + strandat 828.317 kb on - strandat 828.317 kb on - strandat 828.497 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
825,297 + Pf1N1B4_721 0.78 -0.1
825,298 - Pf1N1B4_721 0.78 -0.7
825,372 - Pf1N1B4_721 0.88 -0.3
825,400 - +0.3
825,461 - -1.4
825,461 - +0.1
825,471 + -1.7
825,472 - -0.5
825,474 + -0.9
825,474 + +1.1
825,474 + -0.4
825,474 + +1.3
825,474 + -0.1
825,474 + -1.7
825,474 + -0.7
825,474 + -0.9
825,475 - +0.3
825,478 + +0.3
825,478 + -0.2
825,478 + -0.3
825,478 + +0.9
825,479 - -0.3
825,479 - -2.4
825,479 - -1.0
825,479 - +0.6
825,479 - -0.3
825,479 - +1.6
825,481 - +0.7
825,496 + +0.2
825,496 + +0.9
825,496 + +1.6
825,497 - +0.4
825,497 - -1.3
825,497 - +1.9
825,605 + Pf1N1B4_722 0.22 -0.6
825,822 + Pf1N1B4_722 0.54 -1.0
825,822 + Pf1N1B4_722 0.54 -0.2
826,066 + +0.3
826,067 - +0.0
826,090 + -0.4
826,164 + +1.5
826,164 + -1.3
826,164 + -0.0
826,164 + -1.5
826,164 + -0.6
826,164 + -0.4
826,164 + -0.7
826,164 + -0.4
826,164 + +0.9
826,164 + +0.3
826,164 + +0.1
826,164 + -0.4
826,164 + -0.7
826,164 + -0.3
826,164 + -0.4
826,164 + -0.7
826,165 - -1.0
826,165 - +0.2
826,165 - -1.2
826,165 - +0.3
826,165 - +0.4
826,169 - -1.7
826,216 + -1.7
826,216 + +0.4
826,216 + -0.9
826,217 - +1.3
826,472 - Pf1N1B4_723 0.15 +0.3
826,472 - Pf1N1B4_723 0.15 -0.3
826,472 - Pf1N1B4_723 0.15 +0.4
826,523 + Pf1N1B4_723 0.19 +0.3
826,523 + Pf1N1B4_723 0.19 +0.7
826,523 + Pf1N1B4_723 0.19 -0.6
826,524 - Pf1N1B4_723 0.19 +1.3
826,524 - Pf1N1B4_723 0.19 +0.0
826,524 - Pf1N1B4_723 0.19 +0.0
826,524 - Pf1N1B4_723 0.19 -0.0
826,524 - Pf1N1B4_723 0.19 +0.2
826,524 - Pf1N1B4_723 0.19 -0.0
826,524 - Pf1N1B4_723 0.19 +0.8
826,538 + Pf1N1B4_723 0.20 -0.0
826,538 + Pf1N1B4_723 0.20 +0.3
826,538 + Pf1N1B4_723 0.20 +0.6
826,538 + Pf1N1B4_723 0.20 +0.9
826,538 + Pf1N1B4_723 0.20 +0.9
826,538 + Pf1N1B4_723 0.20 +0.1
826,538 + Pf1N1B4_723 0.20 +0.6
826,539 - Pf1N1B4_723 0.21 +0.6
826,539 - Pf1N1B4_723 0.21 +1.0
826,539 - Pf1N1B4_723 0.21 -0.4
826,551 + Pf1N1B4_723 0.21 +0.6
826,551 + Pf1N1B4_723 0.21 +0.6
826,594 - Pf1N1B4_723 0.25 -1.5
826,594 - Pf1N1B4_723 0.25 +0.8
826,596 - Pf1N1B4_723 0.25 +0.3
826,675 + Pf1N1B4_723 0.31 +0.3
826,888 + Pf1N1B4_723 0.48 +0.4
826,888 + Pf1N1B4_723 0.48 -0.0
826,888 + Pf1N1B4_723 0.48 -0.2
826,889 - Pf1N1B4_723 0.48 +1.7
826,889 - Pf1N1B4_723 0.48 +1.1
826,889 - Pf1N1B4_723 0.48 +1.0
826,889 - Pf1N1B4_723 0.48 +0.2
827,000 + Pf1N1B4_723 0.57 -0.7
827,000 + Pf1N1B4_723 0.57 +2.0
827,000 + Pf1N1B4_723 0.57 +0.9
827,000 + Pf1N1B4_723 0.57 -0.7
827,000 + Pf1N1B4_723 0.57 -0.4
827,000 + Pf1N1B4_723 0.57 +0.6
827,001 - Pf1N1B4_723 0.57 +1.0
827,001 - Pf1N1B4_723 0.57 +0.2
827,001 - Pf1N1B4_723 0.57 +1.1
827,001 - Pf1N1B4_723 0.57 +0.6
827,001 - Pf1N1B4_723 0.57 +1.9
827,001 - Pf1N1B4_723 0.57 +1.3
827,001 - Pf1N1B4_723 0.57 +0.7
827,001 - Pf1N1B4_723 0.57 +0.3
827,029 + Pf1N1B4_723 0.59 +0.5
827,113 + Pf1N1B4_723 0.65 -0.6
827,114 - Pf1N1B4_723 0.65 +1.5
827,135 - Pf1N1B4_723 0.67 +1.1
827,135 - Pf1N1B4_723 0.67 +1.0
827,153 - Pf1N1B4_723 0.68 +0.5
827,210 + Pf1N1B4_723 0.73 -0.3
827,211 - Pf1N1B4_723 0.73 +0.1
827,246 + Pf1N1B4_723 0.76 -0.4
827,247 - Pf1N1B4_723 0.76 +0.8
827,247 - Pf1N1B4_723 0.76 +0.4
827,247 - Pf1N1B4_723 0.76 +0.8
827,308 + Pf1N1B4_723 0.81 -0.6
827,309 - Pf1N1B4_723 0.81 +0.1
827,339 + Pf1N1B4_723 0.83 +0.9
827,340 - Pf1N1B4_723 0.83 -0.3
827,340 - Pf1N1B4_723 0.83 +0.7
827,340 - Pf1N1B4_723 0.83 +0.0
827,340 - Pf1N1B4_723 0.83 +0.5
827,340 - Pf1N1B4_723 0.83 -0.1
827,340 - Pf1N1B4_723 0.83 +0.5
827,547 + -0.6
827,548 - +1.3
827,723 + Pf1N1B4_724 0.26 +1.3
827,724 - Pf1N1B4_724 0.26 -0.3
827,724 - Pf1N1B4_724 0.26 -0.3
827,724 - Pf1N1B4_724 0.26 -2.9
827,724 - Pf1N1B4_724 0.26 -1.7
827,724 - Pf1N1B4_724 0.26 +2.3
827,827 - Pf1N1B4_724 0.41 -0.7
827,934 + Pf1N1B4_724 0.57 -1.3
828,174 + -1.5
828,244 + +0.3
828,252 - -0.7
828,276 - +1.7
828,316 + -0.3
828,317 - +0.3
828,317 - -0.6
828,497 + +0.0

Or see this region's nucleotide sequence