Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5392 and Pf1N1B4_5393 are separated by 2 nucleotides Pf1N1B4_5393 and Pf1N1B4_5394 overlap by 46 nucleotides Pf1N1B4_5394 and Pf1N1B4_5395 are separated by 523 nucleotides
Pf1N1B4_5392 - hypothetical protein, at 123,107 to 124,111
_5392
Pf1N1B4_5393 - hypothetical protein, at 124,114 to 125,103
_5393
Pf1N1B4_5394 - hypothetical protein, at 125,058 to 125,429
_5394
Pf1N1B4_5395 - hypothetical protein, at 125,953 to 127,242
_5395
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 123.151 kb on + strand at 123.418 kb on - strand, within Pf1N1B4_5392 at 123.418 kb on - strand, within Pf1N1B4_5392 at 123.418 kb on - strand, within Pf1N1B4_5392 at 123.424 kb on + strand, within Pf1N1B4_5392 at 123.425 kb on - strand, within Pf1N1B4_5392 at 123.425 kb on - strand, within Pf1N1B4_5392 at 123.491 kb on + strand, within Pf1N1B4_5392 at 123.492 kb on - strand at 123.506 kb on - strand, within Pf1N1B4_5392 at 123.535 kb on + strand, within Pf1N1B4_5392 at 123.536 kb on - strand, within Pf1N1B4_5392 at 123.536 kb on - strand, within Pf1N1B4_5392 at 123.806 kb on - strand, within Pf1N1B4_5392 at 123.810 kb on - strand, within Pf1N1B4_5392 at 123.896 kb on + strand, within Pf1N1B4_5392 at 123.897 kb on - strand, within Pf1N1B4_5392 at 123.897 kb on - strand, within Pf1N1B4_5392 at 123.985 kb on - strand, within Pf1N1B4_5392 at 123.988 kb on + strand at 123.988 kb on + strand, within Pf1N1B4_5392 at 123.988 kb on + strand, within Pf1N1B4_5392 at 123.988 kb on + strand at 123.989 kb on - strand, within Pf1N1B4_5392 at 123.991 kb on + strand, within Pf1N1B4_5392 at 123.991 kb on + strand, within Pf1N1B4_5392 at 123.991 kb on + strand at 123.991 kb on + strand, within Pf1N1B4_5392 at 123.991 kb on + strand at 123.996 kb on - strand, within Pf1N1B4_5392 at 124.268 kb on + strand, within Pf1N1B4_5393 at 124.288 kb on + strand, within Pf1N1B4_5393 at 124.289 kb on - strand, within Pf1N1B4_5393 at 124.555 kb on - strand, within Pf1N1B4_5393 at 124.922 kb on - strand, within Pf1N1B4_5393 at 125.022 kb on + strand at 125.023 kb on - strand at 125.023 kb on - strand at 125.283 kb on + strand, within Pf1N1B4_5394 at 125.460 kb on + strand at 125.506 kb on + strand at 125.506 kb on + strand at 125.506 kb on + strand at 125.506 kb on + strand at 125.506 kb on + strand at 125.506 kb on + strand at 125.506 kb on + strand at 125.506 kb on + strand at 125.507 kb on - strand at 125.594 kb on - strand at 125.753 kb on + strand at 125.753 kb on + strand at 125.773 kb on + strand at 125.773 kb on + strand at 125.773 kb on + strand at 125.774 kb on - strand at 125.774 kb on - strand at 125.955 kb on - strand at 125.955 kb on - strand at 125.955 kb on - strand at 125.985 kb on + strand at 125.987 kb on - strand at 125.987 kb on - strand at 126.011 kb on + strand at 126.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 123,151 + +2.0 123,418 - Pf1N1B4_5392 0.31 +0.8 123,418 - Pf1N1B4_5392 0.31 -0.9 123,418 - Pf1N1B4_5392 0.31 +1.6 123,424 + Pf1N1B4_5392 0.32 -0.0 123,425 - Pf1N1B4_5392 0.32 -0.0 123,425 - Pf1N1B4_5392 0.32 +0.6 123,491 + Pf1N1B4_5392 0.38 +0.6 123,492 - -0.0 123,506 - Pf1N1B4_5392 0.40 +0.2 123,535 + Pf1N1B4_5392 0.43 +1.0 123,536 - Pf1N1B4_5392 0.43 +0.3 123,536 - Pf1N1B4_5392 0.43 -0.8 123,806 - Pf1N1B4_5392 0.70 +1.4 123,810 - Pf1N1B4_5392 0.70 +0.1 123,896 + Pf1N1B4_5392 0.79 -0.6 123,897 - Pf1N1B4_5392 0.79 -0.4 123,897 - Pf1N1B4_5392 0.79 -0.4 123,985 - Pf1N1B4_5392 0.87 -0.0 123,988 + +1.0 123,988 + Pf1N1B4_5392 0.88 -0.8 123,988 + Pf1N1B4_5392 0.88 -0.8 123,988 + -0.8 123,989 - Pf1N1B4_5392 0.88 +0.1 123,991 + Pf1N1B4_5392 0.88 -0.8 123,991 + Pf1N1B4_5392 0.88 -0.4 123,991 + -0.0 123,991 + Pf1N1B4_5392 0.88 +0.6 123,991 + +0.2 123,996 - Pf1N1B4_5392 0.88 +0.1 124,268 + Pf1N1B4_5393 0.16 -1.4 124,288 + Pf1N1B4_5393 0.18 -1.2 124,289 - Pf1N1B4_5393 0.18 -0.8 124,555 - Pf1N1B4_5393 0.45 -0.6 124,922 - Pf1N1B4_5393 0.82 -0.0 125,022 + +0.6 125,023 - -0.4 125,023 - -1.2 125,283 + Pf1N1B4_5394 0.60 -1.0 125,460 + -2.0 125,506 + +0.6 125,506 + +0.6 125,506 + -1.8 125,506 + +1.3 125,506 + +1.3 125,506 + -1.6 125,506 + +0.6 125,506 + -1.0 125,507 - +0.2 125,594 - -2.2 125,753 + -0.4 125,753 + +0.5 125,773 + -1.8 125,773 + -0.8 125,773 + -0.4 125,774 - +0.2 125,774 - -1.2 125,955 - +1.0 125,955 - +1.8 125,955 - -0.3 125,985 + +0.2 125,987 - -1.4 125,987 - -0.2 126,011 + +0.6 126,012 - +1.1
Or see this region's nucleotide sequence