Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5093

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5092 and Pf1N1B4_5093 overlap by 10 nucleotides Pf1N1B4_5092 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 5,644,257 to 5,645,321 _5092 Pf1N1B4_5093 - Endo-beta-1,3-glucanase, at 5,645,312 to 5,646,790 _5093 Position (kb) 5645 5646 5647Strain fitness (log2 ratio) -1 0 1 2at 5644.548 kb on + strand, within Pf1N1B4_5092at 5645.192 kb on - strand, within Pf1N1B4_5092at 5645.200 kb on - strand, within Pf1N1B4_5092at 5645.848 kb on - strand, within Pf1N1B4_5093at 5645.889 kb on + strand, within Pf1N1B4_5093at 5646.267 kb on - strand, within Pf1N1B4_5093at 5646.267 kb on - strand, within Pf1N1B4_5093at 5646.270 kb on + strand, within Pf1N1B4_5093at 5646.270 kb on + strand, within Pf1N1B4_5093at 5646.271 kb on - strandat 5646.271 kb on - strand, within Pf1N1B4_5093at 5646.336 kb on - strandat 5646.338 kb on + strand, within Pf1N1B4_5093at 5647.153 kb on + strandat 5647.153 kb on + strandat 5647.326 kb on + strandat 5647.327 kb on - strandat 5647.329 kb on - strandat 5647.409 kb on + strandat 5647.410 kb on - strandat 5647.531 kb on + strandat 5647.767 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,644,548 + Pf1N1B4_5092 0.27 -1.0
5,645,192 - Pf1N1B4_5092 0.88 -0.5
5,645,200 - Pf1N1B4_5092 0.89 +0.2
5,645,848 - Pf1N1B4_5093 0.36 +2.1
5,645,889 + Pf1N1B4_5093 0.39 +0.4
5,646,267 - Pf1N1B4_5093 0.65 +1.4
5,646,267 - Pf1N1B4_5093 0.65 -0.6
5,646,270 + Pf1N1B4_5093 0.65 +0.7
5,646,270 + Pf1N1B4_5093 0.65 +1.3
5,646,271 - +0.1
5,646,271 - Pf1N1B4_5093 0.65 -0.4
5,646,336 - -0.3
5,646,338 + Pf1N1B4_5093 0.69 -0.3
5,647,153 + -1.4
5,647,153 + +0.7
5,647,326 + -0.0
5,647,327 - -0.4
5,647,329 - -0.0
5,647,409 + -0.3
5,647,410 - +2.3
5,647,531 + -0.6
5,647,767 - -0.4

Or see this region's nucleotide sequence