Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5058

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5057 and Pf1N1B4_5058 overlap by 4 nucleotidesPf1N1B4_5058 and Pf1N1B4_5059 are separated by 106 nucleotides Pf1N1B4_5057 - mandelate racemase family protein Pfl_3283, at 5,601,075 to 5,602,349 _5057 Pf1N1B4_5058 - D-galactarate permease, at 5,602,346 to 5,603,743 _5058 Pf1N1B4_5059 - Transcriptional regulator, LysR family, at 5,603,850 to 5,604,752 _5059 Position (kb) 5602 5603 5604Strain fitness (log2 ratio) -2 -1 0 1at 5601.619 kb on + strand, within Pf1N1B4_5057at 5601.620 kb on - strandat 5601.871 kb on + strand, within Pf1N1B4_5057at 5601.872 kb on - strand, within Pf1N1B4_5057at 5601.872 kb on - strand, within Pf1N1B4_5057at 5602.836 kb on + strand, within Pf1N1B4_5058at 5602.836 kb on + strand, within Pf1N1B4_5058at 5602.837 kb on - strandat 5602.947 kb on + strand, within Pf1N1B4_5058at 5602.948 kb on - strandat 5603.340 kb on + strandat 5603.341 kb on - strand, within Pf1N1B4_5058at 5603.343 kb on + strand, within Pf1N1B4_5058at 5603.344 kb on - strand, within Pf1N1B4_5058at 5603.400 kb on + strand, within Pf1N1B4_5058at 5603.400 kb on + strand, within Pf1N1B4_5058at 5603.506 kb on + strand, within Pf1N1B4_5058at 5603.507 kb on - strand, within Pf1N1B4_5058at 5603.637 kb on + strandat 5603.637 kb on + strandat 5603.638 kb on - strandat 5603.731 kb on + strandat 5604.432 kb on + strand, within Pf1N1B4_5059at 5604.433 kb on - strand, within Pf1N1B4_5059at 5604.507 kb on + strand, within Pf1N1B4_5059

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,601,619 + Pf1N1B4_5057 0.43 -0.5
5,601,620 - +0.7
5,601,871 + Pf1N1B4_5057 0.62 -1.5
5,601,872 - Pf1N1B4_5057 0.63 -1.3
5,601,872 - Pf1N1B4_5057 0.63 +1.7
5,602,836 + Pf1N1B4_5058 0.35 -0.9
5,602,836 + Pf1N1B4_5058 0.35 -0.3
5,602,837 - -0.9
5,602,947 + Pf1N1B4_5058 0.43 -1.5
5,602,948 - -0.3
5,603,340 + +0.7
5,603,341 - Pf1N1B4_5058 0.71 -0.5
5,603,343 + Pf1N1B4_5058 0.71 -0.3
5,603,344 - Pf1N1B4_5058 0.71 -0.6
5,603,400 + Pf1N1B4_5058 0.75 -0.4
5,603,400 + Pf1N1B4_5058 0.75 +0.1
5,603,506 + Pf1N1B4_5058 0.83 -1.0
5,603,507 - Pf1N1B4_5058 0.83 -1.4
5,603,637 + -0.3
5,603,637 + -2.1
5,603,638 - -0.3
5,603,731 + -0.3
5,604,432 + Pf1N1B4_5059 0.64 -1.4
5,604,433 - Pf1N1B4_5059 0.65 -1.3
5,604,507 + Pf1N1B4_5059 0.73 +0.1

Or see this region's nucleotide sequence