Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4646 and Pf1N1B4_4647 are separated by 205 nucleotides Pf1N1B4_4647 and Pf1N1B4_4648 are separated by 228 nucleotides Pf1N1B4_4648 and Pf1N1B4_4649 are separated by 428 nucleotides
Pf1N1B4_4646 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,125,168 to 5,126,601
_4646
Pf1N1B4_4647 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 5,126,807 to 5,127,247
_4647
Pf1N1B4_4648 - transcriptional regulator, MerR family, at 5,127,476 to 5,128,453
_4648
Pf1N1B4_4649 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 5,128,882 to 5,129,391
_4649
Position (kb)
5127
5128
5129 Strain fitness (log2 ratio)
-2
-1
0
1 at 5126.562 kb on + strand at 5126.769 kb on + strand at 5126.785 kb on - strand at 5126.826 kb on - strand at 5127.246 kb on - strand at 5127.550 kb on - strand at 5127.914 kb on - strand, within Pf1N1B4_4648 at 5128.046 kb on + strand, within Pf1N1B4_4648 at 5128.220 kb on + strand, within Pf1N1B4_4648 at 5128.220 kb on + strand, within Pf1N1B4_4648 at 5128.277 kb on + strand, within Pf1N1B4_4648 at 5128.278 kb on - strand, within Pf1N1B4_4648 at 5128.278 kb on - strand, within Pf1N1B4_4648 at 5128.459 kb on - strand at 5128.462 kb on + strand at 5128.463 kb on - strand at 5128.463 kb on - strand at 5128.842 kb on - strand at 5128.955 kb on - strand at 5128.985 kb on + strand, within Pf1N1B4_4649 at 5129.330 kb on - strand, within Pf1N1B4_4649
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 5,126,562 + -0.0 5,126,769 + -0.2 5,126,785 - +0.1 5,126,826 - -0.2 5,127,246 - +1.4 5,127,550 - -0.6 5,127,914 - Pf1N1B4_4648 0.45 -1.5 5,128,046 + Pf1N1B4_4648 0.58 -1.0 5,128,220 + Pf1N1B4_4648 0.76 -2.5 5,128,220 + Pf1N1B4_4648 0.76 -0.6 5,128,277 + Pf1N1B4_4648 0.82 -0.5 5,128,278 - Pf1N1B4_4648 0.82 -2.4 5,128,278 - Pf1N1B4_4648 0.82 -0.2 5,128,459 - -0.8 5,128,462 + +1.5 5,128,463 - -0.1 5,128,463 - -0.8 5,128,842 - -0.8 5,128,955 - +0.8 5,128,985 + Pf1N1B4_4649 0.20 -0.6 5,129,330 - Pf1N1B4_4649 0.88 +0.1
Or see this region's nucleotide sequence