Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_150 and Pf1N1B4_151 are separated by 42 nucleotides Pf1N1B4_151 and Pf1N1B4_152 are separated by 274 nucleotides
Pf1N1B4_150 - SyrP-like protein, at 192,102 to 193,085
_150
Pf1N1B4_151 - Thioesterase in siderophore biosynthesis gene cluster, at 193,128 to 193,868
_151
Pf1N1B4_152 - ABC transporter, permease protein, at 194,143 to 195,264
_152
Position (kb) 193
194 Strain fitness (log2 ratio) -1
0
1
2 at 192.305 kb on - strand, within Pf1N1B4_150 at 192.598 kb on + strand at 192.653 kb on - strand, within Pf1N1B4_150 at 192.653 kb on - strand, within Pf1N1B4_150 at 192.712 kb on + strand, within Pf1N1B4_150 at 192.713 kb on - strand, within Pf1N1B4_150 at 192.746 kb on - strand, within Pf1N1B4_150 at 192.746 kb on - strand, within Pf1N1B4_150 at 192.746 kb on - strand, within Pf1N1B4_150 at 192.848 kb on - strand, within Pf1N1B4_150 at 192.848 kb on - strand, within Pf1N1B4_150 at 193.111 kb on - strand at 193.190 kb on + strand at 193.813 kb on + strand at 193.813 kb on + strand at 193.875 kb on + strand at 193.894 kb on + strand at 193.895 kb on - strand at 193.925 kb on + strand at 193.959 kb on + strand at 193.960 kb on - strand at 194.091 kb on + strand at 194.091 kb on + strand at 194.091 kb on + strand at 194.092 kb on - strand at 194.112 kb on + strand at 194.552 kb on + strand, within Pf1N1B4_152 at 194.718 kb on - strand, within Pf1N1B4_152 at 194.718 kb on - strand, within Pf1N1B4_152 at 194.725 kb on + strand, within Pf1N1B4_152 at 194.725 kb on + strand, within Pf1N1B4_152 at 194.856 kb on + strand at 194.857 kb on - strand, within Pf1N1B4_152
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 192,305 - Pf1N1B4_150 0.21 +1.1 192,598 + +1.1 192,653 - Pf1N1B4_150 0.56 +1.1 192,653 - Pf1N1B4_150 0.56 +0.3 192,712 + Pf1N1B4_150 0.62 +0.4 192,713 - Pf1N1B4_150 0.62 -0.8 192,746 - Pf1N1B4_150 0.65 -1.3 192,746 - Pf1N1B4_150 0.65 -1.4 192,746 - Pf1N1B4_150 0.65 -0.8 192,848 - Pf1N1B4_150 0.76 -0.5 192,848 - Pf1N1B4_150 0.76 -0.3 193,111 - -0.2 193,190 + +0.1 193,813 + +0.2 193,813 + +0.1 193,875 + -1.3 193,894 + +1.6 193,895 - -0.1 193,925 + +0.1 193,959 + +1.1 193,960 - +1.1 194,091 + +0.1 194,091 + +0.1 194,091 + +0.1 194,092 - -0.4 194,112 + -0.3 194,552 + Pf1N1B4_152 0.36 +1.1 194,718 - Pf1N1B4_152 0.51 -1.1 194,718 - Pf1N1B4_152 0.51 -0.7 194,725 + Pf1N1B4_152 0.52 -0.5 194,725 + Pf1N1B4_152 0.52 -1.2 194,856 + +2.1 194,857 - Pf1N1B4_152 0.64 -0.7
Or see this region's nucleotide sequence