Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1144

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1143 and Pf1N1B4_1144 are separated by 167 nucleotidesPf1N1B4_1144 and Pf1N1B4_1145 are separated by 11 nucleotidesPf1N1B4_1145 and Pf1N1B4_1146 overlap by 1 nucleotides Pf1N1B4_1143 - Phosphodiesterase/alkaline phosphatase D, at 1,285,072 to 1,286,613 _1143 Pf1N1B4_1144 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 1,286,781 to 1,288,520 _1144 Pf1N1B4_1145 - 1-phosphofructokinase (EC 2.7.1.56), at 1,288,532 to 1,289,473 _1145 Pf1N1B4_1146 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data), at 1,289,473 to 1,292,334 _1146 Position (kb) 1286 1287 1288 1289Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1285.815 kb on + strand, within Pf1N1B4_1143at 1285.829 kb on + strand, within Pf1N1B4_1143at 1285.946 kb on + strand, within Pf1N1B4_1143at 1285.953 kb on - strand, within Pf1N1B4_1143at 1285.965 kb on - strand, within Pf1N1B4_1143at 1286.070 kb on - strand, within Pf1N1B4_1143at 1286.126 kb on + strand, within Pf1N1B4_1143at 1286.126 kb on + strand, within Pf1N1B4_1143at 1286.126 kb on + strand, within Pf1N1B4_1143at 1286.127 kb on - strand, within Pf1N1B4_1143at 1286.127 kb on - strand, within Pf1N1B4_1143at 1286.203 kb on - strand, within Pf1N1B4_1143at 1286.388 kb on + strandat 1286.640 kb on + strandat 1286.640 kb on + strandat 1286.641 kb on - strandat 1286.641 kb on - strandat 1286.641 kb on - strandat 1286.641 kb on - strandat 1286.641 kb on - strandat 1286.738 kb on + strandat 1286.776 kb on + strandat 1286.777 kb on - strandat 1286.839 kb on + strandat 1286.839 kb on + strandat 1286.840 kb on - strandat 1286.840 kb on - strandat 1286.840 kb on - strandat 1286.840 kb on - strandat 1286.884 kb on + strandat 1286.884 kb on + strandat 1286.884 kb on + strandat 1286.885 kb on - strandat 1286.965 kb on + strand, within Pf1N1B4_1144at 1286.965 kb on + strand, within Pf1N1B4_1144at 1286.966 kb on - strand, within Pf1N1B4_1144at 1286.966 kb on - strand, within Pf1N1B4_1144at 1286.966 kb on - strand, within Pf1N1B4_1144at 1286.966 kb on - strand, within Pf1N1B4_1144at 1286.966 kb on - strand, within Pf1N1B4_1144at 1286.966 kb on - strand, within Pf1N1B4_1144at 1287.063 kb on - strand, within Pf1N1B4_1144at 1287.063 kb on - strand, within Pf1N1B4_1144at 1287.063 kb on - strand, within Pf1N1B4_1144at 1287.203 kb on - strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strand, within Pf1N1B4_1144at 1287.385 kb on + strandat 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.386 kb on - strand, within Pf1N1B4_1144at 1287.475 kb on + strandat 1287.619 kb on + strand, within Pf1N1B4_1144at 1287.619 kb on + strand, within Pf1N1B4_1144at 1287.620 kb on - strand, within Pf1N1B4_1144at 1287.620 kb on - strand, within Pf1N1B4_1144at 1287.620 kb on - strandat 1287.802 kb on + strand, within Pf1N1B4_1144at 1287.802 kb on + strand, within Pf1N1B4_1144at 1287.802 kb on + strand, within Pf1N1B4_1144at 1287.802 kb on + strandat 1287.802 kb on + strand, within Pf1N1B4_1144at 1287.802 kb on + strand, within Pf1N1B4_1144at 1287.802 kb on + strand, within Pf1N1B4_1144at 1287.802 kb on + strand, within Pf1N1B4_1144at 1287.803 kb on - strand, within Pf1N1B4_1144at 1287.803 kb on - strand, within Pf1N1B4_1144at 1287.803 kb on - strand, within Pf1N1B4_1144at 1287.803 kb on - strand, within Pf1N1B4_1144at 1287.803 kb on - strand, within Pf1N1B4_1144at 1288.213 kb on + strand, within Pf1N1B4_1144at 1288.214 kb on - strand, within Pf1N1B4_1144at 1288.214 kb on - strand, within Pf1N1B4_1144at 1288.214 kb on - strand, within Pf1N1B4_1144at 1288.316 kb on + strand, within Pf1N1B4_1144at 1288.316 kb on + strand, within Pf1N1B4_1144at 1288.316 kb on + strand, within Pf1N1B4_1144at 1288.316 kb on + strand, within Pf1N1B4_1144at 1288.317 kb on - strand, within Pf1N1B4_1144at 1288.513 kb on - strandat 1288.533 kb on + strandat 1288.533 kb on + strandat 1288.533 kb on + strandat 1288.533 kb on + strandat 1288.534 kb on - strandat 1288.534 kb on - strandat 1288.534 kb on - strandat 1288.534 kb on - strandat 1288.534 kb on - strandat 1288.534 kb on - strandat 1289.197 kb on + strand, within Pf1N1B4_1145at 1289.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,285,815 + Pf1N1B4_1143 0.48 +0.3
1,285,829 + Pf1N1B4_1143 0.49 -0.2
1,285,946 + Pf1N1B4_1143 0.57 +0.8
1,285,953 - Pf1N1B4_1143 0.57 +0.3
1,285,965 - Pf1N1B4_1143 0.58 -1.8
1,286,070 - Pf1N1B4_1143 0.65 +0.1
1,286,126 + Pf1N1B4_1143 0.68 +0.6
1,286,126 + Pf1N1B4_1143 0.68 +0.8
1,286,126 + Pf1N1B4_1143 0.68 +0.5
1,286,127 - Pf1N1B4_1143 0.68 +0.5
1,286,127 - Pf1N1B4_1143 0.68 -1.1
1,286,203 - Pf1N1B4_1143 0.73 +0.9
1,286,388 + +1.5
1,286,640 + -0.5
1,286,640 + +0.7
1,286,641 - +1.5
1,286,641 - -0.0
1,286,641 - +1.8
1,286,641 - +0.1
1,286,641 - -0.5
1,286,738 + -1.1
1,286,776 + +1.0
1,286,777 - +0.5
1,286,839 + -0.9
1,286,839 + -2.4
1,286,840 - -1.9
1,286,840 - -1.0
1,286,840 - +0.5
1,286,840 - -1.3
1,286,884 + -1.1
1,286,884 + -1.7
1,286,884 + +0.7
1,286,885 - -1.3
1,286,965 + Pf1N1B4_1144 0.11 -0.9
1,286,965 + Pf1N1B4_1144 0.11 -0.1
1,286,966 - Pf1N1B4_1144 0.11 -0.9
1,286,966 - Pf1N1B4_1144 0.11 -0.5
1,286,966 - Pf1N1B4_1144 0.11 -2.9
1,286,966 - Pf1N1B4_1144 0.11 -1.3
1,286,966 - Pf1N1B4_1144 0.11 -1.1
1,286,966 - Pf1N1B4_1144 0.11 -2.0
1,287,063 - Pf1N1B4_1144 0.16 -2.5
1,287,063 - Pf1N1B4_1144 0.16 -1.2
1,287,063 - Pf1N1B4_1144 0.16 -1.5
1,287,203 - Pf1N1B4_1144 0.24 -1.1
1,287,385 + Pf1N1B4_1144 0.35 -3.2
1,287,385 + Pf1N1B4_1144 0.35 -0.5
1,287,385 + Pf1N1B4_1144 0.35 -3.5
1,287,385 + Pf1N1B4_1144 0.35 -0.9
1,287,385 + Pf1N1B4_1144 0.35 -2.0
1,287,385 + Pf1N1B4_1144 0.35 -0.9
1,287,385 + Pf1N1B4_1144 0.35 -2.6
1,287,385 + Pf1N1B4_1144 0.35 -0.1
1,287,385 + Pf1N1B4_1144 0.35 -1.1
1,287,385 + Pf1N1B4_1144 0.35 -1.5
1,287,385 + -0.1
1,287,386 - Pf1N1B4_1144 0.35 -2.8
1,287,386 - Pf1N1B4_1144 0.35 +0.5
1,287,386 - Pf1N1B4_1144 0.35 -2.1
1,287,386 - Pf1N1B4_1144 0.35 -0.9
1,287,386 - Pf1N1B4_1144 0.35 -1.5
1,287,386 - Pf1N1B4_1144 0.35 -1.9
1,287,386 - Pf1N1B4_1144 0.35 -1.5
1,287,386 - Pf1N1B4_1144 0.35 -1.9
1,287,386 - Pf1N1B4_1144 0.35 -1.2
1,287,386 - Pf1N1B4_1144 0.35 -1.1
1,287,386 - Pf1N1B4_1144 0.35 -2.4
1,287,386 - Pf1N1B4_1144 0.35 +0.5
1,287,386 - Pf1N1B4_1144 0.35 -2.1
1,287,386 - Pf1N1B4_1144 0.35 -2.4
1,287,386 - Pf1N1B4_1144 0.35 -4.0
1,287,386 - Pf1N1B4_1144 0.35 -2.1
1,287,386 - Pf1N1B4_1144 0.35 -1.5
1,287,386 - Pf1N1B4_1144 0.35 -2.2
1,287,386 - Pf1N1B4_1144 0.35 -3.5
1,287,475 + -2.1
1,287,619 + Pf1N1B4_1144 0.48 -1.3
1,287,619 + Pf1N1B4_1144 0.48 -2.0
1,287,620 - Pf1N1B4_1144 0.48 -0.5
1,287,620 - Pf1N1B4_1144 0.48 -0.7
1,287,620 - -0.5
1,287,802 + Pf1N1B4_1144 0.59 -2.2
1,287,802 + Pf1N1B4_1144 0.59 -0.5
1,287,802 + Pf1N1B4_1144 0.59 +0.5
1,287,802 + -0.9
1,287,802 + Pf1N1B4_1144 0.59 -0.3
1,287,802 + Pf1N1B4_1144 0.59 -1.3
1,287,802 + Pf1N1B4_1144 0.59 -1.3
1,287,802 + Pf1N1B4_1144 0.59 -1.9
1,287,803 - Pf1N1B4_1144 0.59 -0.5
1,287,803 - Pf1N1B4_1144 0.59 +0.5
1,287,803 - Pf1N1B4_1144 0.59 -1.5
1,287,803 - Pf1N1B4_1144 0.59 -2.6
1,287,803 - Pf1N1B4_1144 0.59 -0.9
1,288,213 + Pf1N1B4_1144 0.82 +0.5
1,288,214 - Pf1N1B4_1144 0.82 -1.5
1,288,214 - Pf1N1B4_1144 0.82 -0.9
1,288,214 - Pf1N1B4_1144 0.82 -1.2
1,288,316 + Pf1N1B4_1144 0.88 +0.5
1,288,316 + Pf1N1B4_1144 0.88 -2.6
1,288,316 + Pf1N1B4_1144 0.88 -1.9
1,288,316 + Pf1N1B4_1144 0.88 -1.6
1,288,317 - Pf1N1B4_1144 0.88 -1.9
1,288,513 - -0.3
1,288,533 + -1.3
1,288,533 + -1.5
1,288,533 + -1.5
1,288,533 + -2.4
1,288,534 - -1.1
1,288,534 - +0.9
1,288,534 - -0.8
1,288,534 - -1.7
1,288,534 - -1.5
1,288,534 - +0.1
1,289,197 + Pf1N1B4_1145 0.71 -1.3
1,289,489 - -2.2

Or see this region's nucleotide sequence