Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23605 and HSERO_RS23610 are separated by 80 nucleotides HSERO_RS23610 and HSERO_RS23615 are separated by 10 nucleotides HSERO_RS23615 and HSERO_RS23620 overlap by 4 nucleotides
HSERO_RS23605: HSERO_RS23605 - urease accessory protein UreD, at 5,414,136 to 5,414,999
_RS23605
HSERO_RS23610: HSERO_RS23610 - urease subunit gamma, at 5,415,080 to 5,415,382
_RS23610
HSERO_RS23615: HSERO_RS23615 - urease subunit beta, at 5,415,393 to 5,415,737
_RS23615
HSERO_RS23620: HSERO_RS23620 - urease subunit alpha, at 5,415,734 to 5,417,434
_RS23620
Position (kb) 5415
5416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5414.419 kb on - strand, within HSERO_RS23605 at 5414.643 kb on - strand, within HSERO_RS23605 at 5414.806 kb on - strand, within HSERO_RS23605 at 5414.902 kb on + strand, within HSERO_RS23605 at 5414.952 kb on + strand at 5415.183 kb on + strand, within HSERO_RS23610 at 5415.274 kb on - strand, within HSERO_RS23610 at 5415.570 kb on + strand, within HSERO_RS23615 at 5415.595 kb on - strand, within HSERO_RS23615 at 5415.680 kb on + strand, within HSERO_RS23615 at 5415.700 kb on - strand, within HSERO_RS23615 at 5415.704 kb on + strand at 5415.759 kb on + strand at 5415.843 kb on - strand at 5415.953 kb on - strand, within HSERO_RS23620 at 5416.169 kb on + strand, within HSERO_RS23620 at 5416.502 kb on + strand, within HSERO_RS23620 at 5416.562 kb on + strand, within HSERO_RS23620
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 5,414,419 - HSERO_RS23605 0.33 -0.4 5,414,643 - HSERO_RS23605 0.59 -1.2 5,414,806 - HSERO_RS23605 0.78 -0.1 5,414,902 + HSERO_RS23605 0.89 +0.2 5,414,952 + +0.3 5,415,183 + HSERO_RS23610 0.34 +0.7 5,415,274 - HSERO_RS23610 0.64 +2.1 5,415,570 + HSERO_RS23615 0.51 -2.0 5,415,595 - HSERO_RS23615 0.59 -0.0 5,415,680 + HSERO_RS23615 0.83 -0.2 5,415,700 - HSERO_RS23615 0.89 +0.4 5,415,704 + +0.2 5,415,759 + -0.1 5,415,843 - -0.6 5,415,953 - HSERO_RS23620 0.13 +0.1 5,416,169 + HSERO_RS23620 0.26 -1.6 5,416,502 + HSERO_RS23620 0.45 +1.8 5,416,562 + HSERO_RS23620 0.49 +0.7
Or see this region's nucleotide sequence