Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07750

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07740 and HSERO_RS07745 are separated by 187 nucleotidesHSERO_RS07745 and HSERO_RS07750 are separated by 174 nucleotidesHSERO_RS07750 and HSERO_RS07755 are separated by 128 nucleotides HSERO_RS07740: HSERO_RS07740 - HxlR family transcriptional regulator, at 1,774,537 to 1,774,875 _RS07740 HSERO_RS07745: HSERO_RS07745 - glutathione S-transferase, at 1,775,063 to 1,775,692 _RS07745 HSERO_RS07750: HSERO_RS07750 - tRNA-His, at 1,775,867 to 1,775,942 _RS07750 HSERO_RS07755: HSERO_RS07755 - glutamate racemase, at 1,776,071 to 1,776,964 _RS07755 Position (kb) 1775 1776Strain fitness (log2 ratio) -3 -2 -1 0 1at 1774.891 kb on + strandat 1774.968 kb on - strandat 1775.163 kb on - strand, within HSERO_RS07745at 1775.196 kb on + strand, within HSERO_RS07745at 1775.228 kb on + strand, within HSERO_RS07745at 1775.266 kb on - strand, within HSERO_RS07745at 1775.278 kb on - strand, within HSERO_RS07745at 1775.435 kb on - strand, within HSERO_RS07745at 1775.453 kb on + strand, within HSERO_RS07745at 1775.512 kb on - strand, within HSERO_RS07745at 1775.581 kb on - strand, within HSERO_RS07745at 1776.250 kb on + strand, within HSERO_RS07755at 1776.346 kb on - strand, within HSERO_RS07755at 1776.403 kb on - strand, within HSERO_RS07755at 1776.812 kb on + strand, within HSERO_RS07755

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,774,891 + +0.5
1,774,968 - +0.7
1,775,163 - HSERO_RS07745 0.16 +0.4
1,775,196 + HSERO_RS07745 0.21 -0.1
1,775,228 + HSERO_RS07745 0.26 -0.0
1,775,266 - HSERO_RS07745 0.32 -0.1
1,775,278 - HSERO_RS07745 0.34 -0.0
1,775,435 - HSERO_RS07745 0.59 -0.9
1,775,453 + HSERO_RS07745 0.62 +0.6
1,775,512 - HSERO_RS07745 0.71 -0.4
1,775,581 - HSERO_RS07745 0.82 +0.3
1,776,250 + HSERO_RS07755 0.20 -3.7
1,776,346 - HSERO_RS07755 0.31 -2.7
1,776,403 - HSERO_RS07755 0.37 -2.7
1,776,812 + HSERO_RS07755 0.83 -3.1

Or see this region's nucleotide sequence