Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05505

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05500 and HSERO_RS05505 are separated by 101 nucleotidesHSERO_RS05505 and HSERO_RS05510 are separated by 43 nucleotides HSERO_RS05500: HSERO_RS05500 - transaldolase, at 1,245,187 to 1,246,122 _RS05500 HSERO_RS05505: HSERO_RS05505 - transcriptional regulator, at 1,246,224 to 1,247,078 _RS05505 HSERO_RS05510: HSERO_RS05510 - glucose-6-phosphate 1-dehydrogenase, at 1,247,122 to 1,248,588 _RS05510 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1245.891 kb on + strand, within HSERO_RS05500at 1246.204 kb on - strandat 1246.421 kb on - strand, within HSERO_RS05505at 1246.595 kb on + strand, within HSERO_RS05505at 1246.622 kb on - strand, within HSERO_RS05505at 1246.954 kb on + strand, within HSERO_RS05505at 1246.962 kb on - strand, within HSERO_RS05505at 1247.040 kb on - strandat 1247.044 kb on + strandat 1247.089 kb on - strandat 1247.316 kb on - strand, within HSERO_RS05510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,245,891 + HSERO_RS05500 0.75 -5.6
1,246,204 - -2.6
1,246,421 - HSERO_RS05505 0.23 +1.6
1,246,595 + HSERO_RS05505 0.43 +1.0
1,246,622 - HSERO_RS05505 0.47 +1.3
1,246,954 + HSERO_RS05505 0.85 -1.2
1,246,962 - HSERO_RS05505 0.86 -0.1
1,247,040 - -0.9
1,247,044 + -0.1
1,247,089 - -0.5
1,247,316 - HSERO_RS05510 0.13 -2.6

Or see this region's nucleotide sequence