Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03249

Experiment: D-Raffinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose (C)
3,417,754	+		CCNA_03248	0.75	-0.7
3,417,799	-		CCNA_03248	0.77	+2.0
3,417,888	+		CCNA_03248	0.80	+0.9
3,417,888	+		CCNA_03248	0.80	+0.1
3,417,934	+		CCNA_03248	0.82	+1.2
3,417,934	+		CCNA_03248	0.82	+1.6
3,417,934	+		CCNA_03248	0.82	+0.8
3,417,942	+		CCNA_03248	0.82	+0.9
3,417,962	+		CCNA_03248	0.83	+1.1
3,417,971	+		CCNA_03248	0.84	+1.0
3,417,997	+		CCNA_03248	0.85	+1.3
3,417,998	+		CCNA_03248	0.85	+1.0
3,418,006	-		CCNA_03248	0.85	-0.1
3,418,018	+		CCNA_03248	0.86	+2.5
3,418,023	+		CCNA_03248	0.86	+2.6
3,418,031	-		CCNA_03248	0.86	-1.4
3,418,031	-		CCNA_03248	0.86	-0.1
3,418,031	-		CCNA_03248	0.86	-0.9
3,418,043	-		CCNA_03248	0.87	-0.7
3,418,188	+				+1.4
3,418,189	+				-1.5
3,418,211	+				+1.3
3,418,219	-				-1.8
3,418,224	-				+0.3
3,418,229	-				+0.1
3,418,235	+				+1.9
3,418,262	+				+1.7
3,418,264	+				+1.2
3,418,264	+				+2.1
3,418,272	-				-0.5
3,418,272	-				-2.1
3,418,276	+				+1.0
3,418,284	-				-1.9
3,418,287	+				+1.4
3,418,287	+				+1.5
3,418,287	+				+1.8
3,418,295	-				+0.0
3,418,295	-				+1.3
3,418,305	-				-0.1
3,418,312	-				-0.7
3,418,317	-				+0.5
3,418,325	-				+0.0
3,418,330	-				-2.1
3,418,343	+				+1.5
3,418,364	+				+1.6
3,418,366	+				+2.1
3,418,366	+				+1.3
3,418,366	+				+1.4
3,418,388	+				+2.0
3,418,390	+				+1.4
3,418,398	-				-1.3
3,418,399	-				+1.0
3,418,406	-				-0.8
3,418,486	+				-0.4
3,418,491	+				-0.2
3,418,491	+				-0.1
3,418,494	-				-1.2
3,418,496	+				+0.3
3,418,499	-				-1.1
3,418,499	-				+0.3
3,418,523	+				-2.9
3,418,524	-				+1.6
3,418,546	-				+0.4
3,418,546	-				+0.3
3,418,548	+				-1.9
3,418,548	+				-1.6
3,418,556	-				-0.2
3,418,730	-				-0.8
3,418,799	+				-0.3
3,418,814	-				+1.3
3,418,832	+				+0.6
3,418,832	+				+1.0
3,418,832	+				-0.7
3,418,832	+				+0.3
3,418,832	+				-1.2
3,418,840	-				-0.0
3,418,895	+				+0.4
3,418,919	-				-2.2
3,418,925	-				-0.1
3,418,999	+		CCNA_03249	0.10	-1.2
3,419,036	+		CCNA_03249	0.12	-0.5
3,419,044	-		CCNA_03249	0.12	+1.6
3,419,152	+		CCNA_03249	0.16	-1.5
3,419,198	-		CCNA_03249	0.18	-0.2
3,419,198	-		CCNA_03249	0.18	-1.3
3,419,198	-		CCNA_03249	0.18	-1.4
3,419,438	+		CCNA_03249	0.28	-0.1
3,419,438	+		CCNA_03249	0.28	-0.6
3,419,448	+		CCNA_03249	0.28	+0.2
3,419,448	+		CCNA_03249	0.28	-0.9
3,419,448	+		CCNA_03249	0.28	+0.4
3,419,450	+		CCNA_03249	0.28	-1.2
3,419,543	+		CCNA_03249	0.32	+0.3
3,419,544	+		CCNA_03249	0.32	+0.7
3,419,551	+		CCNA_03249	0.32	-0.6
3,419,551	+		CCNA_03249	0.32	+0.7
3,419,551	+		CCNA_03249	0.32	+0.5
3,419,551	+		CCNA_03249	0.32	-1.6
3,419,557	-		CCNA_03249	0.32	-2.7
3,419,559	-		CCNA_03249	0.32	-0.9
3,419,559	-		CCNA_03249	0.32	-0.1
3,419,559	-		CCNA_03249	0.32	-0.3
3,419,559	-		CCNA_03249	0.32	-0.9
3,419,559	-		CCNA_03249	0.32	-3.0
3,419,586	+		CCNA_03249	0.34	-1.5
3,419,592	+		CCNA_03249	0.34	-3.0
3,419,592	+		CCNA_03249	0.34	-0.4
3,419,596	+		CCNA_03249	0.34	-1.8
3,419,611	+		CCNA_03249	0.35	-0.5
3,419,618	+		CCNA_03249	0.35	+0.6
3,419,659	-		CCNA_03249	0.36	-0.7
3,419,664	-		CCNA_03249	0.37	-0.5
3,419,686	-		CCNA_03249	0.37	-0.5
3,419,709	+		CCNA_03249	0.38	-0.1
3,419,709	+		CCNA_03249	0.38	-1.1
3,419,717	-		CCNA_03249	0.39	-0.1
3,419,723	+		CCNA_03249	0.39	+1.6
3,419,728	+		CCNA_03249	0.39	+0.7
3,419,736	+		CCNA_03249	0.39	+0.0
3,419,856	+		CCNA_03249	0.44	-1.3
3,419,857	-		CCNA_03249	0.44	-1.0
3,419,873	+		CCNA_03249	0.45	-2.2
3,419,874	+		CCNA_03249	0.45	-1.6
3,419,878	+		CCNA_03249	0.45	-0.5
3,419,881	-		CCNA_03249	0.45	-0.5
3,419,886	-		CCNA_03249	0.45	+1.0
3,419,891	-		CCNA_03249	0.46	-0.2
3,419,891	-		CCNA_03249	0.46	-0.5
3,419,891	-		CCNA_03249	0.46	-1.4
3,419,918	+		CCNA_03249	0.47	-2.4
3,419,926	-		CCNA_03249	0.47	+0.4
3,419,926	-		CCNA_03249	0.47	-0.5
3,419,937	+		CCNA_03249	0.47	-2.0
3,419,965	+		CCNA_03249	0.49	+1.0
3,419,975	+		CCNA_03249	0.49	-0.4
3,419,994	+		CCNA_03249	0.50	+0.0
3,419,995	-		CCNA_03249	0.50	-1.0
3,419,995	-		CCNA_03249	0.50	-1.6
3,420,002	-		CCNA_03249	0.50	-1.1
3,420,025	-		CCNA_03249	0.51	-1.6
3,420,041	+		CCNA_03249	0.52	-0.4
3,420,074	+		CCNA_03249	0.53	-1.1
3,420,079	+		CCNA_03249	0.53	+1.5
3,420,082	+		CCNA_03249	0.53	-3.0
3,420,082	-		CCNA_03249	0.53	+0.2
3,420,082	-		CCNA_03249	0.53	+0.6
3,420,082	-		CCNA_03249	0.53	-1.6
3,420,082	-		CCNA_03249	0.53	-0.9
3,420,087	+		CCNA_03249	0.53	-2.0
3,420,087	+		CCNA_03249	0.53	-0.1
3,420,087	+		CCNA_03249	0.53	-0.2
3,420,092	+		CCNA_03249	0.54	-3.1
3,420,095	-		CCNA_03249	0.54	-2.2
3,420,095	-		CCNA_03249	0.54	-1.3
3,420,100	-		CCNA_03249	0.54	+0.0
3,420,105	+		CCNA_03249	0.54	-2.2
3,420,113	+		CCNA_03249	0.54	+0.5
3,420,123	+		CCNA_03249	0.55	-1.0
3,420,123	+		CCNA_03249	0.55	-2.3
3,420,128	+		CCNA_03249	0.55	-0.2
3,420,131	-		CCNA_03249	0.55	-0.1
3,420,131	-		CCNA_03249	0.55	+0.0
3,420,143	-		CCNA_03249	0.56	-1.4
3,420,156	+		CCNA_03249	0.56	+0.6
3,420,161	+		CCNA_03249	0.56	-1.3
3,420,161	+		CCNA_03249	0.56	-0.6
3,420,164	-		CCNA_03249	0.56	-0.9
3,420,174	-		CCNA_03249	0.57	-3.5
3,420,175	-		CCNA_03249	0.57	-2.4
3,420,198	-		CCNA_03249	0.58	-0.8
3,420,198	-		CCNA_03249	0.58	+1.3
3,420,214	+		CCNA_03249	0.58	-0.9
3,420,219	+		CCNA_03249	0.59	-1.9
3,420,219	-		CCNA_03249	0.59	+0.1
3,420,244	+		CCNA_03249	0.60	+0.3
3,420,249	+		CCNA_03249	0.60	+0.3
3,420,289	+		CCNA_03249	0.61	-1.9
3,420,298	-		CCNA_03249	0.62	+1.6
3,420,345	+		CCNA_03249	0.64	-0.9
3,420,356	+		CCNA_03249	0.64	-0.9
3,420,364	+		CCNA_03249	0.64	-0.1
3,420,364	-		CCNA_03249	0.64	-1.4
3,420,369	+		CCNA_03249	0.65	-0.2
3,420,372	-		CCNA_03249	0.65	+0.0
3,420,372	-		CCNA_03249	0.65	-2.8
3,420,377	-		CCNA_03249	0.65	-0.9
3,420,443	-		CCNA_03249	0.67	+0.0
3,420,446	+		CCNA_03249	0.68	-0.3
3,420,460	+		CCNA_03249	0.68	+1.8
3,420,461	-		CCNA_03249	0.68	-1.0
3,420,464	+		CCNA_03249	0.68	-1.3
3,420,468	-		CCNA_03249	0.68	-1.5
3,420,468	-		CCNA_03249	0.68	-1.1
3,420,558	+		CCNA_03249	0.72	+1.3
3,420,589	+		CCNA_03249	0.73	-0.2
3,420,612	-		CCNA_03249	0.74	+2.4
3,420,625	-		CCNA_03249	0.75	+0.5
3,420,625	-		CCNA_03249	0.75	-0.7
3,420,635	+		CCNA_03249	0.75	-1.1
3,420,659	-		CCNA_03249	0.76	-2.4
3,420,669	-		CCNA_03249	0.76	-1.3
3,420,669	-		CCNA_03249	0.76	+0.6
3,420,671	+		CCNA_03249	0.77	-0.7
3,420,679	-		CCNA_03249	0.77	-1.6
3,420,725	+		CCNA_03249	0.79	-0.7
3,420,783	+		CCNA_03249	0.81	-1.7
3,420,789	+		CCNA_03249	0.81	+0.5
3,420,789	+		CCNA_03249	0.81	+1.0
3,420,823	+		CCNA_03249	0.83	+1.0
3,420,831	-		CCNA_03249	0.83	-1.0
3,420,841	-		CCNA_03249	0.83	-2.0
3,420,856	+		CCNA_03249	0.84	+0.9
3,420,860	-				+1.0
3,420,878	+		CCNA_03249	0.85	-0.4
3,420,879	+		CCNA_03249	0.85	-0.1
3,420,886	-		CCNA_03249	0.85	-1.4
3,420,887	-		CCNA_03249	0.85	-0.6
3,420,887	-		CCNA_03249	0.85	-2.5
3,420,917	+		CCNA_03249	0.86	+0.3
3,421,043	+				+0.9
3,421,044	+				+0.9
3,421,054	+				+0.7
3,421,102	+				-0.3
3,421,105	-				-1.3
3,421,120	+				-0.9
3,421,129	-				+1.0
3,421,151	-				-1.8
3,421,158	+				+0.7
3,421,158	+				-0.3
3,421,168	+				+1.0
3,421,168	+				-1.3
3,421,171	-				-1.3
3,421,176	-				+0.6
3,421,176	-				+1.4
3,421,213	+				+0.9
3,421,226	-				+1.1
3,421,266	-				+1.3
3,421,304	-				-0.2
3,421,330	+				-1.6
3,421,335	+				-0.3
3,421,343	-				-0.9
3,421,343	-				-1.7
3,421,356	+				-0.5
3,421,399	+				-1.0
3,421,437	+				+0.7
3,421,464	+				-2.8
3,421,464	+				-0.7
3,421,464	+				-1.1
3,421,464	+				+0.3
3,421,464	+				-3.1
3,421,465	+				-1.3
3,421,465	+				-0.8
3,421,472	-				-1.4
3,421,472	-				-0.9
3,421,472	-				-2.1
3,421,473	-				-0.6
3,421,473	-				-0.2
3,421,473	-				+0.7
3,421,493	+				-1.6
3,421,537	+				-1.9
3,421,545	-		CCNA_03250	0.11	-0.9
3,421,546	+		CCNA_03250	0.11	-1.4
3,421,554	-		CCNA_03250	0.12	-1.2
3,421,594	+		CCNA_03250	0.17	-0.5
3,421,646	+		CCNA_03250	0.23	-1.2
3,421,665	-		CCNA_03250	0.25	+1.0
3,421,682	-		CCNA_03250	0.28	+0.0
3,421,699	-		CCNA_03250	0.30	-1.3
3,421,699	-		CCNA_03250	0.30	-0.8
3,421,699	-		CCNA_03250	0.30	-1.2
3,421,703	+		CCNA_03250	0.30	+0.4
3,421,711	-		CCNA_03250	0.31	-1.4
3,421,711	-		CCNA_03250	0.31	-1.7
3,421,754	-		CCNA_03250	0.36	-0.6
3,421,810	-		CCNA_03250	0.43	-1.1
3,421,867	+		CCNA_03250	0.50	-1.6
3,421,940	+		CCNA_03250	0.59	-2.0
3,421,941	+		CCNA_03250	0.59	-0.3
3,421,941	+		CCNA_03250	0.59	-0.6
3,421,941	+		CCNA_03250	0.59	-1.7
3,421,942	+		CCNA_03250	0.59	-2.0
3,421,949	-		CCNA_03250	0.60	-1.4
3,421,949	-		CCNA_03250	0.60	-1.0
3,421,960	+		CCNA_03250	0.62	-1.4
3,421,991	+		CCNA_03250	0.65	-0.6
3,421,999	-		CCNA_03250	0.66	-0.2
3,422,045	+		CCNA_03250	0.72	-0.9
3,422,053	-		CCNA_03250	0.73	-0.9
3,422,058	+		CCNA_03250	0.74	-1.1
3,422,071	+		CCNA_03250	0.75	+0.9
3,422,073	+		CCNA_03250	0.75	-0.7
3,422,089	-		CCNA_03250	0.77	+0.3
3,422,117	+		CCNA_03250	0.81	+0.3
3,422,144	+		CCNA_03250	0.84	+0.6
3,422,144	+		CCNA_03250	0.84	-0.6
3,422,144	+		CCNA_03250	0.84	+0.6
3,422,149	+		CCNA_03250	0.85	-1.3
3,422,149	+		CCNA_03250	0.85	-0.8
3,422,152	-		CCNA_03250	0.85	+0.3
3,422,152	-		CCNA_03250	0.85	-1.8
3,422,152	-		CCNA_03250	0.85	-2.2
3,422,152	-		CCNA_03250	0.85	-0.6
3,422,152	-		CCNA_03250	0.85	-2.2
3,422,152	-		CCNA_03250	0.85	-0.1
3,422,152	-		CCNA_03250	0.85	-2.1