Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03248

Experiment: D-Raffinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose (C)
3,414,870	-		CCNA_03247	0.60	+0.3
3,414,872	+		CCNA_03247	0.60	+0.0
3,414,924	-		CCNA_03247	0.63	+0.0
3,414,980	+		CCNA_03247	0.66	+2.7
3,415,038	+		CCNA_03247	0.69	+2.2
3,415,038	+		CCNA_03247	0.69	+0.4
3,415,038	+		CCNA_03247	0.69	+0.8
3,415,038	+		CCNA_03247	0.69	+1.7
3,415,038	+		CCNA_03247	0.69	+1.3
3,415,046	-		CCNA_03247	0.70	-1.5
3,415,046	-		CCNA_03247	0.70	-0.3
3,415,046	-		CCNA_03247	0.70	-1.5
3,415,046	-		CCNA_03247	0.70	-1.5
3,415,046	-		CCNA_03247	0.70	-2.0
3,415,046	-		CCNA_03247	0.70	-0.1
3,415,048	+		CCNA_03247	0.70	+0.2
3,415,048	+		CCNA_03247	0.70	+0.7
3,415,056	-		CCNA_03247	0.70	-1.4
3,415,056	-		CCNA_03247	0.70	-0.5
3,415,069	+		CCNA_03247	0.71	+0.9
3,415,155	+		CCNA_03247	0.76	+2.2
3,415,155	+		CCNA_03247	0.76	+1.0
3,415,163	-		CCNA_03247	0.76	-0.9
3,415,163	-		CCNA_03247	0.76	-0.9
3,415,163	-		CCNA_03247	0.76	+0.0
3,415,163	-		CCNA_03247	0.76	-1.9
3,415,163	-		CCNA_03247	0.76	-0.3
3,415,163	-		CCNA_03247	0.76	-1.6
3,415,168	-		CCNA_03247	0.76	+1.6
3,415,191	+		CCNA_03247	0.78	-0.4
3,415,192	+		CCNA_03247	0.78	+0.8
3,415,192	+		CCNA_03247	0.78	+0.9
3,415,200	-		CCNA_03247	0.78	-1.6
3,415,210	-		CCNA_03247	0.79	-0.4
3,415,232	-		CCNA_03247	0.80	-0.1
3,415,238	+		CCNA_03247	0.80	+1.0
3,415,239	+		CCNA_03247	0.80	+1.3
3,415,249	+		CCNA_03247	0.81	+1.4
3,415,257	+		CCNA_03247	0.81	+1.4
3,415,257	-		CCNA_03247	0.81	+0.4
3,415,301	-		CCNA_03247	0.84	-0.9
3,415,301	-		CCNA_03247	0.84	+0.6
3,415,302	-		CCNA_03247	0.84	-1.9
3,415,308	-		CCNA_03247	0.84	-2.7
3,415,378	-		CCNA_03247	0.88	-0.3
3,415,402	-		CCNA_03247	0.89	-1.4
3,415,423	+				+2.2
3,415,460	+				+2.1
3,415,502	+				+1.9
3,415,511	+				+1.7
3,415,658	+				+1.8
3,415,658	+				+1.7
3,415,667	+				+3.0
3,415,702	-				-1.2
3,415,728	+				+0.0
3,415,948	+				-0.3
3,415,956	-				-0.4
3,415,973	+				-1.0
3,415,993	+				-1.7
3,416,009	-				+0.8
3,416,025	+				+1.9
3,416,034	+				+0.7
3,416,050	-				-1.1
3,416,115	+				-0.5
3,416,223	-		CCNA_03248	0.14	-0.6
3,416,278	-		CCNA_03248	0.16	-1.7
3,416,291	-		CCNA_03248	0.17	-2.7
3,416,291	-		CCNA_03248	0.17	-2.8
3,416,296	-		CCNA_03248	0.17	-1.2
3,416,314	-		CCNA_03248	0.18	-0.7
3,416,314	-		CCNA_03248	0.18	-2.0
3,416,564	+		CCNA_03248	0.28	+0.2
3,416,581	+		CCNA_03248	0.28	+1.6
3,416,581	+		CCNA_03248	0.28	+1.9
3,416,634	-		CCNA_03248	0.30	-0.6
3,416,650	-		CCNA_03248	0.31	-1.0
3,416,657	-		CCNA_03248	0.31	-1.0
3,416,700	-		CCNA_03248	0.33	+1.0
3,416,727	+		CCNA_03248	0.34	-0.1
3,416,759	+		CCNA_03248	0.35	+0.5
3,416,759	+		CCNA_03248	0.35	+0.5
3,416,759	+		CCNA_03248	0.35	+1.1
3,416,767	-		CCNA_03248	0.36	-0.4
3,416,775	+		CCNA_03248	0.36	-1.3
3,416,802	-		CCNA_03248	0.37	-1.5
3,416,825	+		CCNA_03248	0.38	+1.7
3,416,833	+		CCNA_03248	0.38	+0.7
3,416,833	-		CCNA_03248	0.38	-0.5
3,416,949	-		CCNA_03248	0.43	-2.2
3,416,966	+		CCNA_03248	0.44	+1.0
3,417,040	+		CCNA_03248	0.47	+1.0
3,417,046	+		CCNA_03248	0.47	+0.6
3,417,069	+		CCNA_03248	0.48	+0.4
3,417,076	-		CCNA_03248	0.48	-1.5
3,417,086	-		CCNA_03248	0.48	+1.7
3,417,099	-		CCNA_03248	0.49	-1.6
3,417,099	-		CCNA_03248	0.49	-0.9
3,417,141	+		CCNA_03248	0.51	+1.0
3,417,158	-		CCNA_03248	0.51	-1.0
3,417,161	+		CCNA_03248	0.51	+1.0
3,417,192	+		CCNA_03248	0.53	-0.4
3,417,216	-		CCNA_03248	0.54	-1.6
3,417,219	+		CCNA_03248	0.54	+0.3
3,417,272	+		CCNA_03248	0.56	+0.2
3,417,280	-		CCNA_03248	0.56	-1.5
3,417,311	+		CCNA_03248	0.57	-0.4
3,417,319	-		CCNA_03248	0.58	-1.6
3,417,329	+		CCNA_03248	0.58	+0.9
3,417,338	-		CCNA_03248	0.58	-1.4
3,417,350	+		CCNA_03248	0.59	-0.2
3,417,358	-		CCNA_03248	0.59	+0.3
3,417,377	-		CCNA_03248	0.60	-1.3
3,417,389	-		CCNA_03248	0.61	+0.3
3,417,419	+		CCNA_03248	0.62	-0.3
3,417,422	-		CCNA_03248	0.62	-0.6
3,417,475	+		CCNA_03248	0.64	+0.0
3,417,483	+		CCNA_03248	0.64	+0.1
3,417,509	+		CCNA_03248	0.65	-0.2
3,417,524	+		CCNA_03248	0.66	+1.7
3,417,567	-		CCNA_03248	0.68	-1.8
3,417,583	+		CCNA_03248	0.68	+1.6
3,417,583	+		CCNA_03248	0.68	+0.0
3,417,617	+		CCNA_03248	0.70	-2.0
3,417,630	-		CCNA_03248	0.70	-2.3
3,417,705	-		CCNA_03248	0.73	+0.3
3,417,754	+		CCNA_03248	0.75	-0.7
3,417,799	-		CCNA_03248	0.77	+2.0
3,417,888	+		CCNA_03248	0.80	+0.9
3,417,888	+		CCNA_03248	0.80	+0.1
3,417,934	+		CCNA_03248	0.82	+1.2
3,417,934	+		CCNA_03248	0.82	+1.6
3,417,934	+		CCNA_03248	0.82	+0.8
3,417,942	+		CCNA_03248	0.82	+0.9
3,417,962	+		CCNA_03248	0.83	+1.1
3,417,971	+		CCNA_03248	0.84	+1.0
3,417,997	+		CCNA_03248	0.85	+1.3
3,417,998	+		CCNA_03248	0.85	+1.0
3,418,006	-		CCNA_03248	0.85	-0.1
3,418,018	+		CCNA_03248	0.86	+2.5
3,418,023	+		CCNA_03248	0.86	+2.6
3,418,031	-		CCNA_03248	0.86	-1.4
3,418,031	-		CCNA_03248	0.86	-0.1
3,418,031	-		CCNA_03248	0.86	-0.9
3,418,043	-		CCNA_03248	0.87	-0.7
3,418,188	+				+1.4
3,418,189	+				-1.5
3,418,211	+				+1.3
3,418,219	-				-1.8
3,418,224	-				+0.3
3,418,229	-				+0.1
3,418,235	+				+1.9
3,418,262	+				+1.7
3,418,264	+				+1.2
3,418,264	+				+2.1
3,418,272	-				-0.5
3,418,272	-				-2.1
3,418,276	+				+1.0
3,418,284	-				-1.9
3,418,287	+				+1.4
3,418,287	+				+1.5
3,418,287	+				+1.8
3,418,295	-				+0.0
3,418,295	-				+1.3
3,418,305	-				-0.1
3,418,312	-				-0.7
3,418,317	-				+0.5
3,418,325	-				+0.0
3,418,330	-				-2.1
3,418,343	+				+1.5
3,418,364	+				+1.6
3,418,366	+				+2.1
3,418,366	+				+1.3
3,418,366	+				+1.4
3,418,388	+				+2.0
3,418,390	+				+1.4
3,418,398	-				-1.3
3,418,399	-				+1.0
3,418,406	-				-0.8
3,418,486	+				-0.4
3,418,491	+				-0.2
3,418,491	+				-0.1
3,418,494	-				-1.2
3,418,496	+				+0.3
3,418,499	-				-1.1
3,418,499	-				+0.3
3,418,523	+				-2.9
3,418,524	-				+1.6
3,418,546	-				+0.4
3,418,546	-				+0.3
3,418,548	+				-1.9
3,418,548	+				-1.6
3,418,556	-				-0.2
3,418,730	-				-0.8
3,418,799	+				-0.3
3,418,814	-				+1.3
3,418,832	+				+0.6
3,418,832	+				+1.0
3,418,832	+				-0.7
3,418,832	+				+0.3
3,418,832	+				-1.2
3,418,840	-				-0.0
3,418,895	+				+0.4
3,418,919	-				-2.2
3,418,925	-				-0.1
3,418,999	+		CCNA_03249	0.10	-1.2
3,419,036	+		CCNA_03249	0.12	-0.5
3,419,044	-		CCNA_03249	0.12	+1.6
3,419,152	+		CCNA_03249	0.16	-1.5
3,419,198	-		CCNA_03249	0.18	-0.2
3,419,198	-		CCNA_03249	0.18	-1.3
3,419,198	-		CCNA_03249	0.18	-1.4