Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03071

Experiment: D-Raffinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose (C)
3,220,508	+		CCNA_03068	0.69	-0.7
3,220,509	-		CCNA_03068	0.69	-0.4
3,220,516	-		CCNA_03068	0.70	-0.5
3,220,519	+		CCNA_03068	0.71	-1.1
3,220,524	+		CCNA_03068	0.72	+0.9
3,220,533	-		CCNA_03068	0.73	+0.9
3,220,541	+		CCNA_03068	0.74	-1.5
3,220,597	+		CCNA_03068	0.83	-0.2
3,220,602	+		CCNA_03068	0.84	-0.7
3,220,627	-		CCNA_03068	0.88	-0.1
3,220,629	+		CCNA_03068	0.88	-1.2
3,220,630	+		CCNA_03068	0.89	+0.6
3,220,638	-		CCNA_03068	0.90	-1.3
3,220,638	-		CCNA_03068	0.90	-0.6
3,220,643	-				+1.0
3,220,670	-				-1.1
3,220,672	+				-0.9
3,220,675	-				-0.8
3,220,692	+				-0.6
3,220,694	+				-1.0
3,220,747	-		CCNA_03069	0.13	-1.3
3,220,749	+		CCNA_03069	0.14	-1.9
3,220,749	+		CCNA_03069	0.14	-2.3
3,220,749	+		CCNA_03069	0.14	+0.0
3,220,749	+		CCNA_03069	0.14	-0.4
3,220,749	+		CCNA_03069	0.14	-0.2
3,220,749	+		CCNA_03069	0.14	-0.7
3,220,749	+				+1.0
3,220,749	+		CCNA_03069	0.14	-2.4
3,220,749	+		CCNA_03069	0.14	-1.3
3,220,749	+		CCNA_03069	0.14	-0.3
3,220,757	-		CCNA_03069	0.16	+1.2
3,220,757	-		CCNA_03069	0.16	+0.0
3,220,757	-		CCNA_03069	0.16	-1.4
3,220,757	-		CCNA_03069	0.16	-0.4
3,220,757	-		CCNA_03069	0.16	-0.7
3,220,757	-		CCNA_03069	0.16	-2.1
3,220,757	-		CCNA_03069	0.16	-2.4
3,220,757	-		CCNA_03069	0.16	-0.6
3,220,759	-		CCNA_03069	0.16	-0.6
3,220,791	-		CCNA_03069	0.25	-0.5
3,220,824	+		CCNA_03069	0.34	-2.7
3,220,825	-		CCNA_03069	0.34	+0.2
3,220,876	-		CCNA_03069	0.48	+0.8
3,220,899	-		CCNA_03069	0.54	+0.0
3,220,899	-		CCNA_03069	0.54	-2.2
3,220,964	-		CCNA_03069	0.72	-1.2
3,220,987	+		CCNA_03069	0.78	-0.3
3,220,996	+		CCNA_03069	0.80	-2.4
3,221,001	+		CCNA_03069	0.81	+0.3
3,221,009	-		CCNA_03069	0.84	-0.2
3,221,038	-				-0.7
3,221,070	+				-0.4
3,221,070	+				-0.0
3,221,071	-				-1.7
3,221,071	-				+0.4
3,221,071	-				+1.0
3,221,078	-				+1.3
3,221,078	-				-1.2
3,221,090	-				+2.0
3,221,095	-		CCNA_03070	0.10	-1.8
3,221,114	-		CCNA_03070	0.19	-1.0
3,221,180	+		CCNA_03070	0.50	+0.6
3,221,184	+		CCNA_03070	0.51	-0.0
3,221,186	+		CCNA_03070	0.52	+0.2
3,221,246	+		CCNA_03070	0.80	+1.6
3,221,354	-				-1.3
3,221,367	+				-1.0
3,221,367	+				+0.3
3,221,367	+				+0.0
3,221,375	-				-2.5
3,221,375	-				+0.9
3,221,375	-				-0.7
3,221,490	-				-0.8
3,221,558	-				-0.2
3,221,558	-				-1.4
3,221,573	+				-2.2
3,221,581	-				-0.9
3,221,640	+		CCNA_03071	0.11	-2.0
3,221,647	-		CCNA_03071	0.11	-0.9
3,221,648	-		CCNA_03071	0.11	-0.9
3,221,729	-		CCNA_03071	0.18	-1.3
3,221,734	-		CCNA_03071	0.18	-2.2
3,221,743	+		CCNA_03071	0.19	-1.6
3,221,743	+		CCNA_03071	0.19	-1.9
3,221,751	-		CCNA_03071	0.19	+0.2
3,221,753	+		CCNA_03071	0.19	-1.0
3,221,786	+		CCNA_03071	0.22	-0.0
3,221,787	+				+0.6
3,221,788	+		CCNA_03071	0.22	-1.2
3,221,794	-		CCNA_03071	0.23	+0.8
3,221,794	-		CCNA_03071	0.23	-0.3
3,221,795	-		CCNA_03071	0.23	-0.2
3,221,798	+		CCNA_03071	0.23	+1.4
3,221,798	-		CCNA_03071	0.23	+1.0
3,221,827	+		CCNA_03071	0.25	-1.5
3,221,835	-		CCNA_03071	0.26	-1.5
3,221,837	+		CCNA_03071	0.26	-0.8
3,221,875	-		CCNA_03071	0.29	+0.4
3,221,875	-		CCNA_03071	0.29	-1.0
3,221,924	+		CCNA_03071	0.33	-1.7
3,221,929	+		CCNA_03071	0.33	+0.2
3,221,932	-		CCNA_03071	0.33	-0.3
3,221,944	+		CCNA_03071	0.34	-0.8
3,221,944	+		CCNA_03071	0.34	+0.1
3,221,944	+		CCNA_03071	0.34	+1.1
3,221,944	+		CCNA_03071	0.34	+0.1
3,221,944	+		CCNA_03071	0.34	-0.5
3,221,944	+		CCNA_03071	0.34	-0.5
3,221,951	-		CCNA_03071	0.35	-0.0
3,221,952	-		CCNA_03071	0.35	-2.2
3,221,952	-		CCNA_03071	0.35	+0.2
3,221,952	-		CCNA_03071	0.35	-1.0
3,221,952	-		CCNA_03071	0.35	+0.4
3,221,952	-		CCNA_03071	0.35	-0.2
3,221,952	-		CCNA_03071	0.35	-0.3
3,221,958	+		CCNA_03071	0.36	+0.8
3,221,958	+		CCNA_03071	0.36	-2.4
3,221,959	+		CCNA_03071	0.36	+1.0
3,221,966	-		CCNA_03071	0.36	-0.7
3,221,967	-		CCNA_03071	0.36	-1.0
3,221,967	-		CCNA_03071	0.36	-0.9
3,222,006	+		CCNA_03071	0.39	-1.3
3,222,006	+		CCNA_03071	0.39	+1.4
3,222,019	+		CCNA_03071	0.40	-0.5
3,222,019	-		CCNA_03071	0.40	-0.9
3,222,027	-		CCNA_03071	0.41	-1.4
3,222,093	-		CCNA_03071	0.46	-0.9
3,222,094	+		CCNA_03071	0.46	+0.9
3,222,094	+		CCNA_03071	0.46	+0.1
3,222,094	+		CCNA_03071	0.46	-0.1
3,222,100	-		CCNA_03071	0.47	-2.5
3,222,102	-		CCNA_03071	0.47	-1.3
3,222,102	-		CCNA_03071	0.47	-0.9
3,222,102	-		CCNA_03071	0.47	-0.6
3,222,110	-		CCNA_03071	0.47	-0.9
3,222,127	-		CCNA_03071	0.49	+0.2
3,222,147	+		CCNA_03071	0.50	-0.7
3,222,153	+		CCNA_03071	0.51	+0.6
3,222,153	+		CCNA_03071	0.51	-1.3
3,222,153	+		CCNA_03071	0.51	-1.0
3,222,153	+		CCNA_03071	0.51	-0.4
3,222,158	+		CCNA_03071	0.51	+0.1
3,222,161	-		CCNA_03071	0.51	+0.7
3,222,161	-		CCNA_03071	0.51	-0.0
3,222,161	-		CCNA_03071	0.51	+1.0
3,222,198	+		CCNA_03071	0.54	-0.2
3,222,216	+		CCNA_03071	0.56	-1.6
3,222,216	+		CCNA_03071	0.56	-3.3
3,222,224	-		CCNA_03071	0.56	-1.2
3,222,228	+		CCNA_03071	0.57	+0.3
3,222,266	-		CCNA_03071	0.60	-0.5
3,222,297	+		CCNA_03071	0.62	-0.9
3,222,319	+		CCNA_03071	0.64	+0.4
3,222,327	+		CCNA_03071	0.64	+0.4
3,222,327	-		CCNA_03071	0.64	-2.4
3,222,335	-		CCNA_03071	0.65	-1.3
3,222,340	-		CCNA_03071	0.65	+0.3
3,222,350	+		CCNA_03071	0.66	-1.4
3,222,358	-		CCNA_03071	0.67	-0.6
3,222,367	+		CCNA_03071	0.68	-2.3
3,222,380	+		CCNA_03071	0.69	-1.3
3,222,393	-		CCNA_03071	0.70	+1.1
3,222,410	-		CCNA_03071	0.71	-0.7
3,222,418	-		CCNA_03071	0.72	+1.3
3,222,433	+		CCNA_03071	0.73	-1.5
3,222,441	-		CCNA_03071	0.73	-1.0
3,222,441	-		CCNA_03071	0.73	-0.3
3,222,448	+		CCNA_03071	0.74	+0.7
3,222,471	+		CCNA_03071	0.76	-0.0
3,222,472	-		CCNA_03071	0.76	-1.5
3,222,479	-		CCNA_03071	0.76	-0.4
3,222,480	-		CCNA_03071	0.76	-0.1
3,222,485	-		CCNA_03071	0.77	-0.2
3,222,485	-		CCNA_03071	0.77	-1.9
3,222,485	-		CCNA_03071	0.77	-0.7
3,222,487	+		CCNA_03071	0.77	+1.8
3,222,521	-		CCNA_03071	0.80	-2.1
3,222,521	-		CCNA_03071	0.80	-1.2
3,222,521	-		CCNA_03071	0.80	-2.0
3,222,521	-		CCNA_03071	0.80	-0.5
3,222,523	+		CCNA_03071	0.80	-0.4
3,222,603	+		CCNA_03071	0.86	-0.2
3,222,603	+		CCNA_03071	0.86	+1.0
3,222,603	+		CCNA_03071	0.86	-0.3
3,222,603	+		CCNA_03071	0.86	-0.5
3,222,611	-		CCNA_03071	0.87	-0.5
3,222,611	-		CCNA_03071	0.87	-1.6
3,222,611	-		CCNA_03071	0.87	-2.3
3,222,611	-		CCNA_03071	0.87	-0.7
3,222,627	+		CCNA_03071	0.88	-1.5
3,222,629	-		CCNA_03071	0.88	-2.6
3,222,658	+				-2.7
3,222,677	-				+0.4
3,222,694	-				-1.9
3,222,710	-				-1.6
3,222,715	+				-1.0
3,222,721	+				+1.6
3,222,752	+				+1.4
3,222,759	+				-1.3
3,222,770	+				-1.2
3,222,778	-				+0.0
3,222,778	-				+0.3
3,222,782	+				-1.2
3,222,805	-				-2.4
3,222,813	+				-1.4
3,222,864	-				-0.2
3,222,871	+				-0.2
3,222,876	+				-1.1
3,222,876	+				+1.0
3,222,886	+				-0.4
3,222,945	+		CCNA_03072	0.12	-1.4
3,223,070	-		CCNA_03072	0.30	-0.9
3,223,139	+		CCNA_03072	0.40	+0.9
3,223,139	+		CCNA_03072	0.40	-0.8
3,223,146	+		CCNA_03072	0.41	-0.4
3,223,162	+		CCNA_03072	0.43	-0.1
3,223,222	+		CCNA_03072	0.51	+1.0
3,223,267	-		CCNA_03072	0.58	-1.7
3,223,388	+		CCNA_03072	0.75	-0.4
3,223,406	-		CCNA_03072	0.77	-0.7
3,223,414	+		CCNA_03072	0.79	+0.6
3,223,422	+		CCNA_03072	0.80	+0.3
3,223,422	+		CCNA_03072	0.80	-0.7
3,223,488	+		CCNA_03072	0.89	-1.1
3,223,508	+				+1.1
3,223,515	-				+1.0
3,223,537	+				+0.5
3,223,578	+				-1.9
3,223,578	+				-1.2
3,223,578	+				-0.4
3,223,578	+				-2.1
3,223,578	+				-0.5
3,223,578	+				-1.4
3,223,586	-				-0.2
3,223,639	+				-0.1
3,223,647	-				-0.9
3,223,668	-				-1.4
3,223,668	-				+0.4
3,223,675	+				-0.5
3,223,690	-				-3.2
3,223,729	+		CCNA_03073	0.17	-0.2
3,223,734	+		CCNA_03073	0.18	-1.9
3,223,734	+		CCNA_03073	0.18	-1.2
3,223,734	+		CCNA_03073	0.18	-2.9
3,223,737	-		CCNA_03073	0.18	-0.4
3,223,741	+		CCNA_03073	0.19	-1.0
3,223,742	-		CCNA_03073	0.19	-1.0
3,223,742	-		CCNA_03073	0.19	-3.0
3,223,742	-		CCNA_03073	0.19	-2.2
3,223,742	-		CCNA_03073	0.19	+0.4
3,223,742	-		CCNA_03073	0.19	-0.4
3,223,742	-		CCNA_03073	0.19	-0.2
3,223,742	-		CCNA_03073	0.19	+0.9