Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01797

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01795 and CCNA_01797 are separated by 353 nucleotidesCCNA_01797 and CCNA_01799 are separated by 165 nucleotides CCNA_01795: CCNA_01795 - phosphopyruvate hydratase, at 1,921,855 to 1,923,135 _01795 CCNA_01797: CCNA_01797 - FtsB-related septum formation initiator, at 1,923,489 to 1,923,791 _01797 CCNA_01799: CCNA_01799 - pyruvate dehydrogenase E1 component alpha subunit, at 1,923,957 to 1,924,988 _01799 Position (kb) 1923 1924Strain fitness (log2 ratio) -1 0 1 2 3at 1923.118 kb on + strandat 1923.126 kb on - strandat 1923.126 kb on - strandat 1923.139 kb on + strandat 1923.140 kb on + strandat 1923.155 kb on + strandat 1923.155 kb on + strandat 1923.155 kb on + strandat 1923.163 kb on - strandat 1923.359 kb on + strandat 1923.413 kb on + strandat 1923.438 kb on - strandat 1923.483 kb on + strandat 1923.491 kb on - strandat 1923.773 kb on + strandat 1923.790 kb on + strandat 1923.805 kb on + strandat 1923.846 kb on + strandat 1923.909 kb on + strandat 1923.936 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,923,118 + +0.6
1,923,126 - -0.4
1,923,126 - -0.1
1,923,139 + +2.3
1,923,140 + +1.6
1,923,155 + +2.5
1,923,155 + +2.7
1,923,155 + +2.8
1,923,163 - -0.4
1,923,359 + -1.1
1,923,413 + +0.8
1,923,438 - +0.5
1,923,483 + +0.3
1,923,491 - -0.4
1,923,773 + +1.5
1,923,790 + +3.7
1,923,805 + +1.9
1,923,846 + +1.0
1,923,909 + +2.4
1,923,936 + +1.2

Or see this region's nucleotide sequence