Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01793 and CCNA_01794 are separated by 12 nucleotides CCNA_01794 and CCNA_01795 are separated by 113 nucleotides CCNA_01795 and CCNA_01797 are separated by 353 nucleotides CCNA_01797 and CCNA_01799 are separated by 165 nucleotides
CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958
_01793
CCNA_01794: CCNA_01794 - enoyl-CoA hydratase/isomerase family, at 1,920,971 to 1,921,741
_01794
CCNA_01795: CCNA_01795 - phosphopyruvate hydratase, at 1,921,855 to 1,923,135
_01795
CCNA_01797: CCNA_01797 - FtsB-related septum formation initiator, at 1,923,489 to 1,923,791
_01797
CCNA_01799: CCNA_01799 - pyruvate dehydrogenase E1 component alpha subunit, at 1,923,957 to 1,924,988
_01799
Position (kb)
1921
1922
1923
1924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1920.918 kb on + strand at 1920.945 kb on + strand at 1920.945 kb on + strand at 1920.945 kb on + strand at 1920.945 kb on + strand at 1920.952 kb on + strand at 1920.954 kb on + strand at 1920.954 kb on + strand at 1920.959 kb on + strand at 1920.989 kb on + strand at 1920.989 kb on + strand at 1920.989 kb on + strand at 1920.991 kb on - strand at 1921.035 kb on + strand at 1921.047 kb on + strand at 1921.047 kb on + strand at 1921.118 kb on + strand, within CCNA_01794 at 1921.152 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.164 kb on + strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.200 kb on + strand, within CCNA_01794 at 1921.200 kb on + strand, within CCNA_01794 at 1921.200 kb on + strand, within CCNA_01794 at 1921.236 kb on + strand, within CCNA_01794 at 1921.308 kb on + strand, within CCNA_01794 at 1921.326 kb on - strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.353 kb on - strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.493 kb on - strand, within CCNA_01794 at 1921.566 kb on + strand, within CCNA_01794 at 1921.646 kb on - strand, within CCNA_01794 at 1921.653 kb on + strand, within CCNA_01794 at 1921.670 kb on - strand at 1921.716 kb on + strand at 1921.758 kb on - strand at 1921.832 kb on + strand at 1921.840 kb on - strand at 1921.851 kb on + strand at 1923.118 kb on + strand at 1923.126 kb on - strand at 1923.126 kb on - strand at 1923.139 kb on + strand at 1923.140 kb on + strand at 1923.155 kb on + strand at 1923.155 kb on + strand at 1923.155 kb on + strand at 1923.163 kb on - strand at 1923.359 kb on + strand at 1923.413 kb on + strand at 1923.438 kb on - strand at 1923.483 kb on + strand at 1923.491 kb on - strand at 1923.773 kb on + strand at 1923.790 kb on + strand at 1923.805 kb on + strand at 1923.846 kb on + strand at 1923.909 kb on + strand at 1923.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 1,920,918 + -0.0 1,920,945 + -0.7 1,920,945 + -0.8 1,920,945 + +1.3 1,920,945 + +0.1 1,920,952 + +0.0 1,920,954 + +0.5 1,920,954 + +0.2 1,920,959 + -0.5 1,920,989 + +0.6 1,920,989 + -0.6 1,920,989 + +0.7 1,920,991 - -1.2 1,921,035 + +0.7 1,921,047 + +1.4 1,921,047 + +1.8 1,921,118 + CCNA_01794 0.19 +2.5 1,921,152 + CCNA_01794 0.23 +1.0 1,921,157 + CCNA_01794 0.24 +1.9 1,921,157 + CCNA_01794 0.24 -0.8 1,921,157 + CCNA_01794 0.24 -0.9 1,921,157 + CCNA_01794 0.24 -0.5 1,921,157 + CCNA_01794 0.24 +0.1 1,921,164 + CCNA_01794 0.25 +1.5 1,921,165 - CCNA_01794 0.25 -0.5 1,921,165 - CCNA_01794 0.25 -0.5 1,921,165 - CCNA_01794 0.25 +1.9 1,921,165 - CCNA_01794 0.25 +0.5 1,921,165 - CCNA_01794 0.25 -0.5 1,921,165 - CCNA_01794 0.25 -0.7 1,921,165 - CCNA_01794 0.25 -0.0 1,921,165 - CCNA_01794 0.25 +0.7 1,921,200 + CCNA_01794 0.30 +0.4 1,921,200 + CCNA_01794 0.30 +0.3 1,921,200 + CCNA_01794 0.30 -1.1 1,921,236 + CCNA_01794 0.34 -0.9 1,921,308 + CCNA_01794 0.44 -0.3 1,921,326 - CCNA_01794 0.46 -0.9 1,921,345 + CCNA_01794 0.49 +0.5 1,921,345 + CCNA_01794 0.49 -0.5 1,921,345 + CCNA_01794 0.49 +0.3 1,921,353 - CCNA_01794 0.50 -1.3 1,921,485 + CCNA_01794 0.67 +0.5 1,921,485 + CCNA_01794 0.67 -0.6 1,921,485 + CCNA_01794 0.67 -1.0 1,921,493 - CCNA_01794 0.68 +1.1 1,921,566 + CCNA_01794 0.77 +2.3 1,921,646 - CCNA_01794 0.88 +0.2 1,921,653 + CCNA_01794 0.88 +0.6 1,921,670 - +0.5 1,921,716 + +1.1 1,921,758 - +0.7 1,921,832 + -0.5 1,921,840 - -1.8 1,921,851 + -0.4 1,923,118 + +0.6 1,923,126 - -0.4 1,923,126 - -0.1 1,923,139 + +2.3 1,923,140 + +1.6 1,923,155 + +2.5 1,923,155 + +2.7 1,923,155 + +2.8 1,923,163 - -0.4 1,923,359 + -1.1 1,923,413 + +0.8 1,923,438 - +0.5 1,923,483 + +0.3 1,923,491 - -0.4 1,923,773 + +1.5 1,923,790 + +3.7 1,923,805 + +1.9 1,923,846 + +1.0 1,923,909 + +2.4 1,923,936 + +1.2
Or see this region's nucleotide sequence